DC900224

Overview
NameDC900224
Unique NameDC900224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.993e-90
Identity = 152/221 (68.78%), Postives = 183/221 (82.81%), Query Frame = 1
Query:    4 IFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 666
            I  +E IEEG++  + E +   +Q  LEK+FGQSPV +A+T +  GG+P   NPASLL+E+I VISCGYE+KTEWGKEIGWIYGSVTEDILTGFKMH  GW S+YCMP R AFKGSAPINLSDRL+QVLRWALGS+EI LSRHCPIWYGY G LK LER +YIN++VYP TS+PL+ YC+LPA CLLT KFI+PEISN+A + F+L+F+SI  TGILE++W
Sbjct:  700 IHALEHIEEGLQVTNAENNSETAQLKLEKKFGQSPVLVASTLLLNGGVPSNVNPASLLRESIQVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLLVYCSLPAICLLTGKFIVPEISNYAGILFLLMFMSIAVTGILEMQW 920          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 4.993e-90
Identity = 158/222 (71.17%), Postives = 185/222 (83.33%), Query Frame = 1
Query:    4 IFNMEDIEEGVEGYDDE-RSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 666
            I  +E+IEEG +G +D  +S   +Q  LEK+FGQSPVF+A+  ME GG+    +PASLL+EAI VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMH+ GW S+YC P  PAFKGSAPINLSDRL+QVLRWALGS+EI LSRHCPIWYGY G LK LERL+YIN++VYP TSIPL+ YC+LPA CLLT KFI+PEISN+AS+ F+ LF SI  TGILE++W
Sbjct:  681 IHALENIEEGTKGTNDAAKSPEAAQLKLEKKFGQSPVFVASAGMENGGLARNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKIPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERLSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASILFMALFGSIAVTGILEMQW 902          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.478e-89
Identity = 154/225 (68.44%), Postives = 184/225 (81.78%), Query Frame = 1
Query:    4 IFNMEDIEEGV--EGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            I  +E+++EGV     + E+    +Q  LEK+FGQSPVF+A+  ++ GG+P   +PA LL+EAI VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMH  GW S+YCMP R AFKGSAPINLSDRL+QVLRWALGS+EI LSRHCPIWYGY G LK LER +YIN++VYP TS+PLI YC+LPA CLLT KFI+PEISN+A + F+L+FISI  TGILE++W G
Sbjct:  694 IHALENVDEGVIVPVSNVEKRSEATQLKLEKKFGQSPVFVASAVLQNGGVPRNASPACLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGG 918          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.606e-88
Identity = 157/223 (70.40%), Postives = 182/223 (81.61%), Query Frame = 1
Query:    4 IFNMEDIEEG--VEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 666
            I  +E+IEEG   +G + E+S    Q  LEK+FGQSPVF+A+  ME GG+    +PA LLKEAI VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMH+ GW S+YC P   AFKGSAPINLSDRL+QVLRWALGS+EI LSRHCPIWYGY G LK LERL+YIN++VYP TS+PLI YC+LPA CLLT KFI+PEISN+AS+ F+ LF SI  TGILE++W
Sbjct:  695 IHALENIEEGRVTKGSNVEQSTEAMQMKLEKKFGQSPVFVASARMENGGMARNASPACLLKEAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKLAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERLSYINSVVYPWTSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILEMQW 917          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.125e-49
Identity = 108/238 (45.38%), Postives = 151/238 (63.45%), Query Frame = 1
Query:   22 IEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFME--QG------------------GIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPP-RPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            IE+   G D E S +     L KRFG S  F+A+  +   QG                   +P     A+ + EAI VISC YE+KTEWG+ IGWIYGSVTED++TG++MH RGW S+YC+ P R AF+G+APINL+DRL+QVLRWA GS+EI  SR+  ++   + R+KLL+R+AY N  +YP TS+ L+AYC LPA  L + KFI+  +S     + +++ +++    +LEI+WSG
Sbjct:  808 IEDDDGGADIEASAM-----LPKRFGGSATFVASIPVAEYQGRLLQDTPGCHHGRPAGALAVPREPLDAATVAEAIGVISCFYEEKTEWGRRIGWIYGSVTEDVVTGYRMHNRGWRSVYCVTPRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALF--ASPRMKLLQRVAYFNAGMYPFTSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSG 1038          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.125e-49
Identity = 107/230 (46.52%), Postives = 147/230 (63.91%), Query Frame = 1
Query:   43 YDDERSLLMSQKSLEKRFGQSPVFI----AATFMEQ---------GGIPP--TTNP-----ASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            YDDE    M+   + K+FG S   I     A F  +          G PP   T P     AS + EAI VISC YEDKTEWG  IGWIYGSVTED++TG++MH RGW S+YC+  R AF+G+APINL+DRL+QVLRWA GS+EI  SR+  +    + ++K+L+R+AY+N  +YP TSI LI YC LPA  L + +FI+  ++    ++ +++ I++    +LEI+WSG
Sbjct:  756 YDDEE---MNLSLVPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAIAVISCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALL--ASSKMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSG 980          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.470e-49
Identity = 91/176 (51.70%), Postives = 127/176 (72.16%), Query Frame = 1
Query:  145 IPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            +P     A+ + E++ VISC YEDKTEWG  +GWIYGSVTED++TG++MH RGW S+YC+  R +F+GSAPINL+DRL+QVLRWA GS+EI  SR+  I    + RLK L+RLAY+N  +YP TS+ LI YC LPAF L + +FI+  +S    ++ +++ I +    +LE++WSG
Sbjct:  768 VPRDPLDATTVAESVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDSFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAIL--ASKRLKFLQRLAYLNVGIYPFTSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSG 941          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.507e-49
Identity = 108/234 (46.15%), Postives = 147/234 (62.82%), Query Frame = 1
Query:   31 GVEGYDDERSLLMSQKSLEKRFGQSPVFI----AATFME---------QGGIPP--TTNP-----ASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            G +  DDE    M+   + K+FG S   I     A F           Q G PP   T P     AS + EAI VISC YEDKTEWG  IGWIYGSVTED++TG++MH RGW S+YC+  R AF+G+APINL+DRL+QVLRWA GS+EI  SR+   +   + R+K+L+R+AY+N  +YP TS  LI YC LPA  L + +FI+  ++    ++ +++ I++    +LEI+WSG
Sbjct:  752 GGDSDDDEE---MNLSLVPKKFGNSTFLIDSIPVAEFQGRPLADHPAVQNGRPPGALTIPRELLDASTVAEAIAVISCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAFF--ASPRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSG 980          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.507e-49
Identity = 89/176 (50.57%), Postives = 130/176 (73.86%), Query Frame = 1
Query:  145 IPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            IP  T  AS++ EAI V+SC YE+KTEWG  +GWIYGSVTED++TG++MH RGW S+YC+  R AF+G+APINL+DRL+QVLRWA GS+EI  SR+  ++   + ++K+L+R+AY+N  +YP TS+ LI YC LPA  L + +FI+  ++     + +++ I++    +LEI+WSG
Sbjct:  787 IPRETLDASIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALF--ASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSG 960          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.507e-49
Identity = 89/176 (50.57%), Postives = 130/176 (73.86%), Query Frame = 1
Query:  145 IPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            IP  T  AS++ EAI V+SC YE+KTEWG  +GWIYGSVTED++TG++MH RGW S+YC+  R AF+G+APINL+DRL+QVLRWA GS+EI  SR+  ++   + ++K+L+R+AY+N  +YP TS+ LI YC LPA  L + +FI+  ++     + +++ I++    +LEI+WSG
Sbjct:  787 IPRETLDASIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALF--ASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSG 960          
The following BLAST results are available for this feature:
BLAST of DC900224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA9_ARATH4.993e-9068.78Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA5_ARATH4.993e-9071.17Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA2_ARATH2.478e-8968.44Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA6_ARATH1.606e-8870.40Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CSLD4_ORYSJ1.125e-4945.38Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD2_ARATH1.125e-4946.52Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD4_ARATH1.470e-4951.70Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD3_ARATH2.507e-4946.15Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD1_ORYSJ2.507e-4950.57Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI2.507e-4950.57Cellulose synthase-like protein D1 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionDC900224 VSS Citrus sinensis cDNA clone VS28263 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900224 ID=DC900224; Name=DC900224; organism=Citrus sinensis; type=EST; length=676bp
CCCATTTTCAATATGGAAGACATTGAGGAGGGCGTTGAAGGATATGATGA
CGAGAGATCACTGCTGATGTCGCAGAAGAGTTTAGAGAAGCGTTTTGGTC
AATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAGGCATTCCA
CCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCATGTTATTAG
TTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGGATGGATCT
ATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGCATGCTCGT
GGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTTAAGGGGTC
TGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCGATGGGCCT
TGGGGTCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATATGGTATGGC
TACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTAT
TGTCTACCCACTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTG
CTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTT
GCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAAT
ACTGGAGATTAGATGGAGTGGGGGTG
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