DC900224

Overview
NameDC900224
Unique NameDC900224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig440 contig Csv1_Contig440:730..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.167e-38
Identity = 77/199 (38.69%), Postives = 120/199 (60.30%), Query Frame = 1
Query:   88 KRFGQSPVFIA----ATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            K+FG    FI+    A   E+  I P     S+L+E    ++C YED T+WGK++GW+Y   TED++TGF++H  GW S+YC     AF+G+APINL++RL Q+LRW+ GS+E+  S +CP+  G   RL  ++R+AYIN   YP+TS+ L+ Y   P   +    F I +      ++ +++       G++EI+W+G
Sbjct:  513 KKFGNLDSFISSIPIAANQERSIISPPALEESILQELSDAMACAYEDGTDWGKDVGWVYNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAG--RRLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAG 709          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = 1
Query:   85 EKRFGQSPVFIAATFMEQGGIPPTTNPASL------LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            +K +G+S  F A T        P    A++      + EA+ V +  YE KT WG +IGW+YG+VTED++TG++MH +GW S YC     AF G+APINL++RL QVLRW+ GS+EI  SR+ P++   +  L  L+R+AYIN   YP T++ LI Y T+PA   +T  FI+   +    ++  ++  ++    +LE++W+G
Sbjct:  570 KKAYGKSDAF-ADTIPRASHPSPYAAEAAVAADEAAIAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLF--GSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAG 768          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 76/202 (37.62%), Postives = 122/202 (60.40%), Query Frame = 1
Query:   91 RFGQSPVFI----AATFMEQGGIPPTT---NPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTN-KFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            R+G S  FI    AA   E+    P     +  + + E   V++C YED TEWG  +GW+Y   TED++TGF++H +GW S+YC     AF+G+APINL++RL Q+LRW+ GS+E+  SR+CP+  G   RL+ ++R+AY N   YP++++ ++ Y  LP   L  + +F I +  +    + + +   I   G++EI+W+G
Sbjct:  499 RYGNSMPFINTIPAAASQERSIASPAAASLDETAAMAEVEEVMTCAYEDGTEWGDGVGWVYDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGC--RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAG 698          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 67/202 (33.17%), Postives = 116/202 (57.43%), Query Frame = 1
Query:   82 LEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH-----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            +  +FG S  F+  T ++      +  P ++L E++      + +C YED T WG+++GW+Y   TED++TGF+MH +GW S+Y      AF+G+APINL++RL Q+LRW+ GS+E+  S    +  G   RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I        ++ + +   I   G+ E++W+G
Sbjct:  513 IANKFGSSTSFVG-TMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAG 711          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 67/202 (33.17%), Postives = 116/202 (57.43%), Query Frame = 1
Query:   82 LEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH-----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            +  +FG S  F+  T ++      +  P ++L E++      + +C YED T WG+++GW+Y   TED++TGF+MH +GW S+Y      AF+G+APINL++RL Q+LRW+ GS+E+  S    +  G   RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I        ++ + +   I   G+ E++W+G
Sbjct:  483 IANKFGSSTSFVG-TMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAG 681          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 67/198 (33.84%), Postives = 112/198 (56.57%), Query Frame = 1
Query:   91 RFGQSPVFIAATF----MEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            +FG S   +++       E+   PP     S+ ++   V +CGY+  T WG++ GW+Y   TED+ TGF+MH +GW S+Y      AF+G+APINL++RL Q+LRW+ GS+E+  S    +  G   RL  L+R+AY+N   YP+ ++ +  Y   P   L++ ++ I +      ++ + +   I   G+ E++WSG
Sbjct:  525 KFGASSTLVSSMLDGANQERSITPPVAIDGSVARDLAAVTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSG 720          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 62/160 (38.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  193 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            V+S  ++ +T+WGK +G+IY   TEDI+TGF++H +GW S+YC     AF G+APINL++RL+Q++RW+ GS+E+  S + P+  G   RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W+G
Sbjct:  548 VVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAG 705          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 62/160 (38.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  193 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            V+S  ++ +T+WGK +G+IY   TEDI+TGF++H +GW S+YC     AF G+APINL++RL+Q++RW+ GS+E+  S + P+  G   RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W+G
Sbjct:  548 VVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAG 705          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29
Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1
Query:   79 SLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588
            SL +RFG S   + +       I    NP ++L  +I     V  C YE +T WG  IGW+Y SV ED+ T   +H+RGW S Y  P  PAF GS P  + + L Q  RWA G IEIL ++  P+   ++ +++  +RLAY+  I+  L SIP + YC LPA+CLL N  + P+
Sbjct:  398 SLARRFGNSKEMMKSVV---DAIQRNPNPQNILTNSIEAAREVGHCQYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDTPAFLGSMPAGVPEALLQQRRWATGWIEILFNKQSPLRGLFSKKIRFRQRLAYL-CIITCLRSIPELIYCLLPAYCLLHNSTLFPK 567          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   70 SQKSLEKRFGQSPVF--IAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILE 657
            S K L  RFG S      A   +      P  + +S ++ A  V +C Y+  T WG+E+GW+YGS+TEDILTG ++HA GW S+  +   PAF GSAPI     L Q  RWA G  EI++SR+ PI      RLK  + LAY+  + +PL +   + Y  L  +C+LTN+  +P+ S       + LFIS      +E
Sbjct:  402 SYKELHTRFGNSEELNESARNIIWDLSSKPMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFME 599          
The following BLAST results are available for this feature:
BLAST of DC900224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF8_ORYSJ1.167e-3838.69Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF6_ORYSJ1.092e-3639.60Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF9_ORYSJ2.691e-3537.62Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF2_ORYSJ5.610e-3333.17Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ5.610e-3333.17Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ7.327e-3333.84Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF3_ORYSI1.058e-3138.75Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ1.382e-3138.75Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLB1_ARATH4.915e-2940.23Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH2_ORYSJ8.384e-2938.38Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionDC900224 VSS Citrus sinensis cDNA clone VS28263 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900224 ID=DC900224; Name=DC900224; organism=Citrus sinensis; type=EST; length=676bp
CCCATTTTCAATATGGAAGACATTGAGGAGGGCGTTGAAGGATATGATGA
CGAGAGATCACTGCTGATGTCGCAGAAGAGTTTAGAGAAGCGTTTTGGTC
AATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAGGCATTCCA
CCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCATGTTATTAG
TTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGGATGGATCT
ATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGCATGCTCGT
GGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTTAAGGGGTC
TGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCGATGGGCCT
TGGGGTCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATATGGTATGGC
TACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTAT
TGTCTACCCACTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTG
CTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTT
GCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAAT
ACTGGAGATTAGATGGAGTGGGGGTG
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