DC900224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.167e-38 Identity = 77/199 (38.69%), Postives = 120/199 (60.30%), Query Frame = 1 Query: 88 KRFGQSPVFIA----ATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 K+FG FI+ A E+ I P S+L+E ++C YED T+WGK++GW+Y TED++TGF++H GW S+YC AF+G+APINL++RL Q+LRW+ GS+E+ S +CP+ G RL ++R+AYIN YP+TS+ L+ Y P + F I + ++ +++ G++EI+W+G Sbjct: 513 KKFGNLDSFISSIPIAANQERSIISPPALEESILQELSDAMACAYEDGTDWGKDVGWVYNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAG--RRLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAG 709
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36 Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = 1 Query: 85 EKRFGQSPVFIAATFMEQGGIPPTTNPASL------LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 +K +G+S F A T P A++ + EA+ V + YE KT WG +IGW+YG+VTED++TG++MH +GW S YC AF G+APINL++RL QVLRW+ GS+EI SR+ P++ + L L+R+AYIN YP T++ LI Y T+PA +T FI+ + ++ ++ ++ +LE++W+G Sbjct: 570 KKAYGKSDAF-ADTIPRASHPSPYAAEAAVAADEAAIAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLF--GSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAG 768
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35 Identity = 76/202 (37.62%), Postives = 122/202 (60.40%), Query Frame = 1 Query: 91 RFGQSPVFI----AATFMEQGGIPPTT---NPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTN-KFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 R+G S FI AA E+ P + + + E V++C YED TEWG +GW+Y TED++TGF++H +GW S+YC AF+G+APINL++RL Q+LRW+ GS+E+ SR+CP+ G RL+ ++R+AY N YP++++ ++ Y LP L + +F I + + + + + I G++EI+W+G Sbjct: 499 RYGNSMPFINTIPAAASQERSIASPAAASLDETAAMAEVEEVMTCAYEDGTEWGDGVGWVYDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGC--RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAG 698
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33 Identity = 67/202 (33.17%), Postives = 116/202 (57.43%), Query Frame = 1 Query: 82 LEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH-----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 + +FG S F+ T ++ + P ++L E++ + +C YED T WG+++GW+Y TED++TGF+MH +GW S+Y AF+G+APINL++RL Q+LRW+ GS+E+ S + G RL L+R+AY+N YP+ ++ + Y P L++ ++ I ++ + + I G+ E++W+G Sbjct: 513 IANKFGSSTSFVG-TMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAG 711
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33 Identity = 67/202 (33.17%), Postives = 116/202 (57.43%), Query Frame = 1 Query: 82 LEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH-----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 + +FG S F+ T ++ + P ++L E++ + +C YED T WG+++GW+Y TED++TGF+MH +GW S+Y AF+G+APINL++RL Q+LRW+ GS+E+ S + G RL L+R+AY+N YP+ ++ + Y P L++ ++ I ++ + + I G+ E++W+G Sbjct: 483 IANKFGSSTSFVG-TMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAG 681
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33 Identity = 67/198 (33.84%), Postives = 112/198 (56.57%), Query Frame = 1 Query: 91 RFGQSPVFIAATF----MEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 +FG S +++ E+ PP S+ ++ V +CGY+ T WG++ GW+Y TED+ TGF+MH +GW S+Y AF+G+APINL++RL Q+LRW+ GS+E+ S + G RL L+R+AY+N YP+ ++ + Y P L++ ++ I + ++ + + I G+ E++WSG Sbjct: 525 KFGASSTLVSSMLDGANQERSITPPVAIDGSVARDLAAVTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSG 720
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31 Identity = 62/160 (38.75%), Postives = 106/160 (66.25%), Query Frame = 1 Query: 193 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 V+S ++ +T+WGK +G+IY TEDI+TGF++H +GW S+YC AF G+APINL++RL+Q++RW+ GS+E+ S + P+ G RL+ L+R++Y+N +YP+TS+ ++ Y P L+ ++ I ++ +++ + I G LEI+W+G Sbjct: 548 VVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAG 705
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31 Identity = 62/160 (38.75%), Postives = 106/160 (66.25%), Query Frame = 1 Query: 193 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672 V+S ++ +T+WGK +G+IY TEDI+TGF++H +GW S+YC AF G+APINL++RL+Q++RW+ GS+E+ S + P+ G RL+ L+R++Y+N +YP+TS+ ++ Y P L+ ++ I ++ +++ + I G LEI+W+G Sbjct: 548 VVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAG 705
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29 Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1 Query: 79 SLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588 SL +RFG S + + I NP ++L +I V C YE +T WG IGW+Y SV ED+ T +H+RGW S Y P PAF GS P + + L Q RWA G IEIL ++ P+ ++ +++ +RLAY+ I+ L SIP + YC LPA+CLL N + P+ Sbjct: 398 SLARRFGNSKEMMKSVV---DAIQRNPNPQNILTNSIEAAREVGHCQYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDTPAFLGSMPAGVPEALLQQRRWATGWIEILFNKQSPLRGLFSKKIRFRQRLAYL-CIITCLRSIPELIYCLLPAYCLLHNSTLFPK 567
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29 Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 1 Query: 70 SQKSLEKRFGQSPVF--IAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILE 657 S K L RFG S A + P + +S ++ A V +C Y+ T WG+E+GW+YGS+TEDILTG ++HA GW S+ + PAF GSAPI L Q RWA G EI++SR+ PI RLK + LAY+ + +PL + + Y L +C+LTN+ +P+ S + LFIS +E Sbjct: 402 SYKELHTRFGNSEELNESARNIIWDLSSKPMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFME 599 The following BLAST results are available for this feature:
BLAST of DC900224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900224 ID=DC900224; Name=DC900224; organism=Citrus sinensis; type=EST; length=676bpback to top |