DC900224

Overview
NameDC900224
Unique NameDC900224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig440 contig Csv1_Contig440:730..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   70 SQKSLEKRFGQSPVF--IAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILE 657
            S K L  RFG S      A   +      P  + +S ++ A  V +C Y+  T WG+E+GW+YGS+TEDILTG ++HA GW S+  +   PAF GSAPI     L Q  RWA G  EI++SR+ PI      RLK  + LAY+  + +PL +   + Y  L  +C+LTN+  +P+ S       + LFIS      +E
Sbjct:  402 SYKELHTRFGNSEELNESARNIIWDLSSKPMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFME 599          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 1
Query:    4 IFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFI-AATFMEQGGIP--PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFIS 633
            I+ M    EG  GY        S K L  +FG S  F  +A  +  G +   P  + +S +  A  V +C YE  T WG+E+GW+YGS+TED+LTG ++HA GW S       PAF G AP      L Q+ RWA G +EIL+SR+ PI       L+  + LAY+++ V+P+ +   + Y  L  +CLL+N+  +P+ S       + LFI+
Sbjct:  375 IYGMRTGREGTTGYS-------SNKELHSKFGSSNNFKESARDVIYGNLSTEPIVDISSCVDVAKEVAACNYEIGTCWGQEVGWVYGSLTEDVLTGQRIHAAGWRSTLMEIEPPAFMGCAPNGGPACLTQLKRWASGFLEILISRNNPILTTTFKSLQFRQCLAYLHSYVWPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIA 580          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 63/168 (37.50%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  172 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGG 675
            +L  A  V  C YE  T WG +IG+ YGS+ ED  TGF +H  GW SI+C P + AF G +P  L+D + Q +RW++G +E+  SR+ P+ YG    L LL  L Y +   +P   IPL+ Y  LP   L+    + P+ S+     +I+LF+  +A  + +    GG
Sbjct:  405 ILALAHDVAGCNYECNTNWGSKIGFRYGSLVEDYFTGFMLHCEGWRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLLEVAFSRYNPLTYGIK-PLSLLMSLGYCHYAFWPFWCIPLVVYGILPQVALIHGVSVFPKASDPWFWLYIILFLGGYAQDLSDFLLEGG 571          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 63/172 (36.63%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  160 NPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGG 675
            N   +L  A  V  C YE  T WG +IG+ YGS+ ED  TG+++H  GW S++C P R AF G +P +L D ++Q  RWA+G +E+ +SR+ PI YG    + L+  + Y     +   S+PLI Y  LP   LL    + P+ S+     +I+LF+  +   +L+    GG
Sbjct:  430 NAQDVLALAHRVAGCIYELNTNWGSKIGFRYGSLVEDYYTGYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEVAISRYSPITYGVKS-MGLVTGVGYCQYACWAFWSLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGG 600          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  172 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGG 675
            +L  A +V  C YE  T WG +IG+ YGS+ ED  TGF +H  GW S++C P + AF G +P  L D + Q +RWA+G  E+  S++ PI YG    L LL  L Y N+   P  SIPL  Y  LP   L++   + P+ S+     +I+LF   +A  + +    GG
Sbjct:  415 VLSLAHNVAGCIYEYNTNWGSKIGFRYGSLVEDYYTGFMLHCEGWRSVFCNPKKAAFYGDSPKCLVDLVGQQIRWAVGLFEMSFSKYSPITYGIKS-LDLLMGLGYCNSPFKPFWSIPLTVYGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGG 581          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 66/179 (36.87%), Postives = 99/179 (55.31%), Query Frame = 1
Query:   64 LMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVIS----CGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588
            L+++ SL   FG S   + +        P   NP ++L  +I        C YE +T WGK IGW+Y S++ED+ T   +H+RGW S Y  P  PAF GS P    + + Q  RWA GSIE+L ++  P+   +  +L+  +R+AY+  +   + SIP + YC LPA+CLL N  + P+
Sbjct:  392 LLAEDSLSSGFGNSKEMVTSVVEALQRKP---NPQNILTNSIEAAQEVGHCDYESQTSWGKTIGWLYDSMSEDMNTSIGIHSRGWTSSYIAPDPPAFLGSMPPGGLEAMIQQRRWATGSIEVLFNKQSPLLGLFCRKLRFRQRVAYL-CVSICVRSIPELIYCLLPAYCLLHNSALFPK 566          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 64/175 (36.57%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   67 MSQKSLEKRFGQSPVFIAATFMEQGGIP-PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588
            ++++SL + FG S   + +        P P  N    L+ A  +  C YE +T WGK IGW+Y S TED+ T   +H+RGW S Y  P  PAF G  P    + + Q  RWA G +EIL ++  P+   +  +++  + LAY+    + L SIP + YC LPA+CLL N  + P+
Sbjct:  393 LAEESLTREFGNSKEMVKSVVDALQRKPFPQKNLKDSLETAQEMGHCHYEYQTSWGKNIGWLYDSTTEDVNTSIGIHSRGWTSSYIFPDPPAFLGCMPQGGPEVMVQQRRWATGLLEILFNKQSPLIGMFCRKIRFRQSLAYLYVFSWGLRSIPELFYCLLPAYCLLHNSALFPK 567          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  199 SCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILL-FISIFAT--GILEIRWSGG 675
            SC YE+ T+WGKE+G  YG   ED++TG  +  RGW S Y  P + AF G AP NL   L Q  RW+ G  +I+LS++ P+WYG  G++ L   L Y    ++  +S+P++ Y  L + CL     + P++S   S WFI   ++++ AT   + E  W GG
Sbjct:  420 SCTYEENTQWGKEMGVKYGCPVEDVITGLTIQCRGWKSAYLNPEKQAFLGVAPTNLHQMLVQQRRWSEGDFQIMLSKYSPVWYG-KGKISLGLILGYCCYCLWAPSSLPVLIYSVLTSLCLFKGIPLFPKVS---SSWFIPFGYVTVAATAYSLAEFLWCGG 577          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 66/175 (37.71%), Postives = 99/175 (56.57%), Query Frame = 1
Query:   67 MSQKSLEKRFGQSPVFIAATFME-QGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588
            +S+ SL +++G S   + +     Q    P  + A+L++ A  V  C YE +T WG  +GW+Y SV ED  T   +H RGW S +  P  PAF GS P    + + Q  RWA GSIE+L ++  P+  G+  ++K  +RLAY   ++  + SIP + YC LPA+CLL N  + P+
Sbjct:  393 LSEDSLVRKYGSSKELVKSVVDALQRKSNPQKSLANLVEAAQEVGHCHYEYQTSWGN-LGWLYDSVAEDTNTSIGIHLRGWTSSFISPDPPAFLGSTPSVGPEAIVQHRRWATGSIEVLFNKQSPL-IGFRRKIKFRQRLAYF-WVLMCIRSIPELVYCLLPAYCLLNNSALFPK 564          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 61/175 (34.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   67 MSQKSLEKRFGQSPVFIAATFMEQGGIP-PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588
            +++++L + FG S   + +        P P    A+ L+ A  V  C +E +T WGK IGW+Y S  ED  T   +H+RGW S Y  P  PAF G+ P    + + Q  RWA G +E+L ++  P+   +  +++  + LAY+    + L SIP + YC LPA+CLL N  + P+
Sbjct:  393 LAEENLAREFGNSNEMVTSVVEALQRKPNPQNTLANSLEAAQEVGHCHFEYQTSWGKTIGWLYESTAEDANTSIGIHSRGWTSSYISPKPPAFLGAMPPGGPEAMLQQRRWATGLLEVLFNKQSPLIGMFCRKIRFRQSLAYLYIFTWGLRSIPELIYCLLPAYCLLHNAALFPK 567          
The following BLAST results are available for this feature:
BLAST of DC900224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLH2_ORYSI8.384e-2938.38Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH1_ORYSJ4.161e-2836.62Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLG2_ARATH7.097e-2837.50Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG3_ARATH9.269e-2836.63Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG1_ARATH9.269e-2838.69Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLB2_ARATH1.211e-2736.87Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB4_ARATH1.581e-2736.57Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLE1_ARATH4.600e-2738.89Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLB6_ARATH2.283e-2637.71Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB3_ARATH2.283e-2634.86Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionDC900224 VSS Citrus sinensis cDNA clone VS28263 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900224 ID=DC900224; Name=DC900224; organism=Citrus sinensis; type=EST; length=676bp
CCCATTTTCAATATGGAAGACATTGAGGAGGGCGTTGAAGGATATGATGA
CGAGAGATCACTGCTGATGTCGCAGAAGAGTTTAGAGAAGCGTTTTGGTC
AATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAGGCATTCCA
CCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCATGTTATTAG
TTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGGATGGATCT
ATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGCATGCTCGT
GGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTTAAGGGGTC
TGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCGATGGGCCT
TGGGGTCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATATGGTATGGC
TACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTAT
TGTCTACCCACTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTG
CTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTT
GCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAAT
ACTGGAGATTAGATGGAGTGGGGGTG
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