DC900224

Overview
NameDC900224
Unique NameDC900224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig440 contig Csv1_Contig440:730..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 65/175 (37.14%), Postives = 100/175 (57.14%), Query Frame = 1
Query:   67 MSQKSLEKRFGQSPVFIAATFME-QGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPE 588
            +++ SL +++G S   + +     Q    P  + A+L++ A  V  C YE +T WG  +GW+Y SV EDI T   +H RGW S +  P  PAF GS P    + + Q  RWA G+IE+L ++  P    ++G++K  +RLAY   ++  L SIP + YC LPA+CLL +  + P+
Sbjct:  393 LAEDSLVRKYGNSKELVKSVVDALQRKSNPQKSLANLIEAAQEVGHCHYEYQTSWGN-LGWMYDSVAEDINTSVGIHLRGWTSSFISPDPPAFIGSTPTLGLEAIVQQRRWATGAIEVLFNKQSPFMGMFHGKIKFRQRLAYFWALMC-LRSIPELIYCLLPAYCLLHDSALFPK 565          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  151 PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFIS 633
            P  + +S ++ A  V SC YE  T WG E+GW YGS+TEDILTG ++HA GW S       PAF G AP      L Q  RWA G  EIL+S++ P+       L+  + LAY+   V+ +     + Y  L  +CLLTN+  + + S       + LF++
Sbjct:  462 PIVDISSHIEVAKEVSSCNYESGTHWGLEVGWAYGSMTEDILTGQRIHAAGWRSAKLETEPPAFLGCAPTGGPACLTQFKRWATGLFEILISQNNPLLLSIFKHLQFRQCLAYLTLYVWAVRGFVELCYELLVPYCLLTNQSFLSKASENCFNITLALFLT 622          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23
Identity = 56/165 (33.94%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  178 KEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            ++A  +++C YE +T+WG +IG  YG   EDI+TG  +H RGW S +  P R AF G AP  L+  + Q  RW+ G++ I LS++C   +G+ G++KL  ++ Y    ++   S+P + Y  +P+  L+    + P+I +  +  FI +F      G+ E   SG
Sbjct:  421 EKATSLVTCTYEHRTQWGNDIGVKYGFPAEDIITGLAIHCRGWESAFINPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSKYCSFLFGH-GKIKLQLQMGYCICGLWAANSLPTLYYVVIPSLGLVKGTPLFPQIMSPWATPFIYVFCVKTLYGLYEALLSG 584          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  178 KEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLF 627
            ++A  + +C YE +T+WG EIG  YG   ED++TG  +H RGW S+Y  P R AF G AP  L+  + Q  RW+ G+  I LS+H    +G+ G++ L  ++ Y    ++   S+P I Y  +PA  L+    + PEI +  +  FI +F
Sbjct:  416 EKAKSLATCTYELRTQWGNEIGVKYGCPVEDVITGLAIHCRGWESVYMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGH-GKISLQLQMGYCIYGLWAANSLPTIYYVMIPALGLVKGTPLFPEIMSPWATPFIYVF 564          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  193 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFI 618
            +++C YE  T WG E G  YG   ED+ TG ++  RGW S+Y  P R  F G  P +L   L    RW  G ++I LSR+ P   G+ G++KL  ++ Y     + + S P + Y T+P+ C L    + PE +   S WFI
Sbjct:  433 LVTCTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQILVLYKRWTEGFLQISLSRYSPFLLGH-GKIKLGLQMGYSVCGFWAVNSFPTLYYVTIPSLCFLNGISLFPEKT---SPWFI 570          
The following BLAST results are available for this feature:
BLAST of DC900224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB5_ARATH3.894e-2637.14Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLH3_ORYSJ8.120e-2437.89Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLE1_ORYSJ3.086e-2333.94Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE6_ORYSJ5.819e-2236.67Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE2_ORYSJ1.585e-1936.62Cellulose synthase-like protein E2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionDC900224 VSS Citrus sinensis cDNA clone VS28263 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900224 ID=DC900224; Name=DC900224; organism=Citrus sinensis; type=EST; length=676bp
CCCATTTTCAATATGGAAGACATTGAGGAGGGCGTTGAAGGATATGATGA
CGAGAGATCACTGCTGATGTCGCAGAAGAGTTTAGAGAAGCGTTTTGGTC
AATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAGGCATTCCA
CCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCATGTTATTAG
TTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGGATGGATCT
ATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGCATGCTCGT
GGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTTAAGGGGTC
TGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCGATGGGCCT
TGGGGTCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATATGGTATGGC
TACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTAT
TGTCTACCCACTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTG
CTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTT
GCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAAT
ACTGGAGATTAGATGGAGTGGGGGTG
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