CX043461

Overview
NameCX043461
Unique NameCX043461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42
Identity = 91/212 (42.92%), Postives = 125/212 (58.96%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AI  AL I L+ DP                R T GL   FG+ RVF+TPL E GI G AIGLA  G R + EIQF  +++   D I  + A+ RYR+G +++   +T+R+P+G   H    HS S E      PGLKVVIP +P  AKGLL+S IRD +PV+F E   LYR   +EVPE +Y +P+ +A++ REG DIT++ +GA +
Sbjct:    4 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.448e-41
Identity = 93/235 (39.57%), Postives = 133/235 (56.60%), Query Frame = 3
Query:  156 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE----------------EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            ++ +  A+  A+ + LE D                 RCT GL  ++GKSRVF+ P+ E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS  +F    LT+R P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+F EPK LY    +                 VP+  Y +PL +A + R G+D++++ +G  + + + A
Sbjct:    5 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVA 238          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.092e-38
Identity = 85/212 (40.09%), Postives = 122/212 (57.55%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AI  AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GL   G R + EIQF  +++   D +  + A+ RYRSG ++    +T+R+P+G   H    H+ S E      PG+KVVIP +P  AKGLL+S IRD +PVVF E   LYR   +EVPE++Y + L +A+V REG+D++++ +GA +
Sbjct:    4 MTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWT-SPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQEVPEEEYTIELGKADVKREGTDLSIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.949e-38
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + EIQF  +++  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DITL+ +GA +
Sbjct:    4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.949e-38
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + EIQF  +++  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DITL+ +GA +
Sbjct:    4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
The following BLAST results are available for this feature:
BLAST of CX043461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_BACST2.388e-4242.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEPU3.448e-4139.572-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_BACSU2.092e-3840.09Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES7.949e-3840.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ7.949e-3840.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW1.038e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.038e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS1.038e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR1.038e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.038e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B12-C23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043461 ID=CX043461; Name=CX043461; organism=Citrus sinensis; type=EST; length=813bp
GCAAACTCCACAACCAAAAATCTTGGCGGAGATTTCACAATATGGCTTCT
GGTTTGAGAAGATTTGTGGGTTCCCTTTCACGGAGAAATCTTTCAACTGC
TTGTGCGAACAAGCAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTG
GCAAGTCTTTGAATTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCT
TTGGAAACTGATCCACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGG
TGGAGTCTTCCGATGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTC
GGGTATTCAATACCCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATT
GGTCTGGCAGCTATGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGA
TTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCA
GATACAGGAGTGGAAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCC
CCTTACGGAGCTGTGGGCCATGGTGGACACTATCACTCGCAATCTCCTGA
AGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCC
CACGACAAGCAAAAGGATTATTGCTGTCATGCATTCGTGATCCGAACCCT
GTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTTTGTCTGTAGAAGAGGT
TCCTGAGGATGATTATATGTTGCCTTTATCAGAGGCAGAGGTGATTCGAG
AAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACTCTCTATCATG
GAGCAGGCCTGTT
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