CX043461

Overview
NameCX043461
Unique NameCX043461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.038e-37
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.356e-37
Identity = 86/212 (40.57%), Postives = 119/212 (56.13%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQL 791
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMV 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.771e-37
Identity = 83/181 (45.86%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  267 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            T GL   FG++RV +TP+ E G +G A+  A+ G R IAE+ F D+I   FDQ++N+ AKFRY  G +     +TVR  YGA       HSQS    F  +PGLK V+P +P  AKGLLL+ I D +PV FFE K  Y +   EVPED Y +PL +A++ REG+D+TL   G Q++   +A
Sbjct:   54 TKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQV-PITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMK-GEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEA 232          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.269e-35
Identity = 81/209 (38.76%), Postives = 116/209 (55.50%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 782
            +N   A+N A+ +ALE D                 R T GL  ++G  RV++ P+ E  + G  +G A  G + I EIQF+ + FPA  QI   AA+ R RS   +    L VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ I  P+PV+FFEPK LYR   +E+P D Y +P+ EA +I EGS++T+V +G
Sbjct:    6 VNNIEALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAP-LVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYG 213          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.823e-35
Identity = 78/208 (37.50%), Postives = 117/208 (56.25%), Query Frame = 3
Query:  162 NLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 782
            N   A+  A+ +ALE DP                R T GL  ++G+ RV++ P+ E  + G  +G A  G + I EIQF+ + FPA  QI   AA+ R RS   + C  + VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ +  P+PVVFFEPK LYR   +E+P D Y +P+ +A +I +G+++T+V +G
Sbjct:    8 NNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCP-IIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYG 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.095e-34
Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            + T  L  ++G  RV +TP+ E    G AIG A  G R I E     ++  AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  EE+PED+Y++PL +AEV+R+G DIT++
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPEDEYLIPLDKAEVVRKGKDITIL 207          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.551e-33
Identity = 78/179 (43.58%), Postives = 104/179 (58.10%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 797
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + HVPGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VPE    +P  +A+++REGS +T+V +  Q+ +
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKC-PIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPETIEPIPFGQAKILREGSSVTIVTFSIQVKL 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.456e-33
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 797
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+    +P S+A++++EGS++T+V +  Q+ +
Sbjct:   38 KVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKL 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.456e-33
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 797
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+    +P S+A++++EGS++T+V +  Q+ +
Sbjct:   38 KVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKL 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.456e-33
Identity = 77/179 (43.02%), Postives = 104/179 (58.10%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 797
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPVVF E + LY  S  +VP+    +P  +A+++REGS +T+V +  Q+ +
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSF-DVPKTIEPIPFGQAKILREGSSVTIVTFSIQVKL 214          
The following BLAST results are available for this feature:
BLAST of CX043461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAM1.038e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC1.356e-3740.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_BACSU1.771e-3745.86Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_MYCGE1.269e-3538.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN4.823e-3537.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU9.095e-3446.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE1.551e-3343.58Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY3.456e-3342.46Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR3.456e-3342.46Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN3.456e-3343.02Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B12-C23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043461 ID=CX043461; Name=CX043461; organism=Citrus sinensis; type=EST; length=813bp
GCAAACTCCACAACCAAAAATCTTGGCGGAGATTTCACAATATGGCTTCT
GGTTTGAGAAGATTTGTGGGTTCCCTTTCACGGAGAAATCTTTCAACTGC
TTGTGCGAACAAGCAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTG
GCAAGTCTTTGAATTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCT
TTGGAAACTGATCCACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGG
TGGAGTCTTCCGATGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTC
GGGTATTCAATACCCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATT
GGTCTGGCAGCTATGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGA
TTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCA
GATACAGGAGTGGAAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCC
CCTTACGGAGCTGTGGGCCATGGTGGACACTATCACTCGCAATCTCCTGA
AGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCC
CACGACAAGCAAAAGGATTATTGCTGTCATGCATTCGTGATCCGAACCCT
GTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTTTGTCTGTAGAAGAGGT
TCCTGAGGATGATTATATGTTGCCTTTATCAGAGGCAGAGGTGATTCGAG
AAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACTCTCTATCATG
GAGCAGGCCTGTT
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