CX043461

Overview
NameCX043461
Unique NameCX043461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.456e-33
Identity = 76/174 (43.68%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 782
            + T GL   FG  RV +TP+ E G  G  +G A  G R I E    ++   A DQI+N AAK  Y SG Q     +  R P GA       HSQ   A++ H+PGLKVV+P +   AKGLL + IRDPNPV+F E + LY  S E    DD++LP+ +A + R G D TLV +G
Sbjct:  173 KVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAP-IVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFG 345          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.456e-33
Identity = 84/222 (37.84%), Postives = 117/222 (52.70%), Query Frame = 3
Query:  153 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG--HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            +SL +  A+N  L  AL  DP+               R T GL   FG SRV +TPL E GIVG AIGLA  G R + EIQF  ++FP FDQI  + AK   R     +   + +R P+G  GH G   +H ++PEA+F H  GL++V P +P  A  ++   I   +PV+FFEP   Y     EV   +  LPL  + ++R G+D T+V W   + +  +A
Sbjct:   15 QSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSM-PVVIRIPHG--GHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY-WPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGMVPVALRA 232          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 4.514e-33
Identity = 80/172 (46.51%), Postives = 103/172 (59.88%), Query Frame = 3
Query:  267 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 782
            T GL  + G  R+ +TPL E   VG AIG AA G R IAE+ F D++   FDQI N+AAKFRY  G +     + +RA  GA       HSQ     F H+PGLKVV P +P   KGLL+  IRD +PV+F E K LY L   EVPE  Y +P  EA ++R+G D+++V +G
Sbjct:   52 TKGLYAKHG-DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETP-VVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLE-GEVPEGAYAIPFGEANIVRDGKDVSIVTYG 220          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.895e-33
Identity = 77/204 (37.75%), Postives = 113/204 (55.39%), Query Frame = 3
Query:  165 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            LY A+N+ +H  +E DP+ +             + T GL +++G  R+ +TP+ E    G AIG A  G R I E     ++  AF+QI N A    Y SG  F    L VR P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++FFE   LY +  E +P+ +Y++PL +AE++R G+ IT++
Sbjct:    6 LYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTP-LVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIK-ENIPQKEYLVPLEKAELVRSGNQITIL 207          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.991e-32
Identity = 77/171 (45.03%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            + T  L  ++G  RV +TP+ E    G AIG A  G R I E     ++  AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  EE+P+++Y LPL++ E +R+G DIT++
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPQEEYFLPLNKVEFVRKGKDITIL 207          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.518e-32
Identity = 77/183 (42.08%), Postives = 105/183 (57.38%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            + T  L  ++G  RV +TP+ E   +G AIG A  G R I E     ++  AF+QI N A   RY SG  F    + +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPV+FFE   LY L  +E+P D+Y LPL +AE++R+G D+T++ +      + QA
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIP-IVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLK-DELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQA 219          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.452e-31
Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 3
Query:  153 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLV 773
            K + +  A+N A+   +  DP+ +             + T GL +++G  RV++TP+ E G  G  +G A  G + + E    ++   A D I+N AAK  Y S  Q N   +  R P GA    G  HSQ   A++  VPGLKV+ P S   A+GLL + IRDP+PVVF E + LY  S    EE  +  + LP+ +A++ REG D+T+V
Sbjct:   34 KEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIV 243          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.518e-31
Identity = 80/218 (36.70%), Postives = 117/218 (53.67%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            L +Y A+ +A+   +  D R +             + T  L  ++G  RV +TP+ E    G AIG A  G + + E     ++  AF+QI N A    Y SG  ++   L +R P G        HSQ  EA+F  VPGLK+V   +P  AKGLL + IRD NPV+F E   LY L  +E+P+ +Y+LPL +A+V+REGSD+T++ +   L  + QA
Sbjct:    5 LFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIP-LVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLK-QEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQA 220          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.738e-30
Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 797
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   A D IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + ++PGLKVV P S    KGL+++ IRD NPV+F E + LY  S  ++ E+   +P  +A+V++EG  +T+V +  Q+ +
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRC-PIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSF-DISENVEPIPFGKAKVLKEGDSVTIVTFSIQVKL 214          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.101e-30
Identity = 75/204 (36.76%), Postives = 110/204 (53.92%), Query Frame = 3
Query:  165 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            L+ A+ Q L   ++ DPR               + T G A+R+G  R+ +TP+ E    G AIG A  G R + E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++ FE   LY L  E++ E++Y++ L +AEV+R G+DIT++
Sbjct:    6 LFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLK-EDLAEEEYLVCLEKAEVVRPGNDITIL 207          
The following BLAST results are available for this feature:
BLAST of CX043461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_RHIME3.456e-3343.68Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX3.456e-3337.84Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH4.514e-3346.51Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_CHAVU5.895e-3337.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE4.991e-3245.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL6.518e-3242.08Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH1.452e-3136.02Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CYAME5.518e-3136.70Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR2.738e-3039.66Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR6.101e-3036.76Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B12-C23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043461 ID=CX043461; Name=CX043461; organism=Citrus sinensis; type=EST; length=813bp
GCAAACTCCACAACCAAAAATCTTGGCGGAGATTTCACAATATGGCTTCT
GGTTTGAGAAGATTTGTGGGTTCCCTTTCACGGAGAAATCTTTCAACTGC
TTGTGCGAACAAGCAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTG
GCAAGTCTTTGAATTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCT
TTGGAAACTGATCCACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGG
TGGAGTCTTCCGATGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTC
GGGTATTCAATACCCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATT
GGTCTGGCAGCTATGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGA
TTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCA
GATACAGGAGTGGAAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCC
CCTTACGGAGCTGTGGGCCATGGTGGACACTATCACTCGCAATCTCCTGA
AGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCC
CACGACAAGCAAAAGGATTATTGCTGTCATGCATTCGTGATCCGAACCCT
GTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTTTGTCTGTAGAAGAGGT
TCCTGAGGATGATTATATGTTGCCTTTATCAGAGGCAGAGGTGATTCGAG
AAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACTCTCTATCATG
GAGCAGGCCTGTT
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