CX043461

Overview
NameCX043461
Unique NameCX043461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 80/213 (37.56%), Postives = 114/213 (53.52%), Query Frame = 3
Query:  147 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLV 773
            S K++ +  A+N A+   L+ D   +             + + GL DRFG+ RV +TP+ E G  G A+G A  G + I E    ++   A D +VN AAK  Y SG    C  +  R P GA    G  HSQ    ++  +PGLKV++P S   A+GLL + IRDPNPVVF E + LY  S    EE    ++ LP  +A++ REG+DI++V
Sbjct:   35 STKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQ-MVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIV 245          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 81/238 (34.03%), Postives = 120/238 (50.42%), Query Frame = 3
Query:  102 CANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVGW--GAQLSI 797
            C N  + +       +  ++ +  A+NQA+   ++ D R +             + + GL  + G  RV +TP+ E G  G A+G A  G R I E    ++   A DQI+N AAK  Y S  +     +  R P GA       HSQ   A++ H PGLKVV P S   AKGLL + IRD NPVVF E + LY  S    +EV  DD+++P+ +A++ R G  +T+V +  G + S+
Sbjct:    6 CGNLFVARLAGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVP-IVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSL 242          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.028e-29
Identity = 79/219 (36.07%), Postives = 114/219 (52.05%), Query Frame = 3
Query:  153 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQ-FNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLS 794
            K + +  AIN AL   L  D + +             + T GL D++G  R+ +TP+ E G  G  +G A  G R I E    ++   A D I+N +AK  Y SG + FN   +  R P G     G  HSQ   A++  VPGLKVV P S    +GLL S IRD NPVV+ E + LY       ++  + +Y++P+ +A+V REG D+T+VG+   +S
Sbjct:   27 KEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFN--PIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVS 243          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.954e-29
Identity = 79/209 (37.80%), Postives = 112/209 (53.59%), Query Frame = 3
Query:  165 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQ 788
            L+ A+ +A+   +E + R               + T GL  ++GK RV +TP+ E   VG A+G AA G   + E     +I  A+ QI N        SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGLL S IR  NP++F E   LY L   EVP++DY+LPL +AE++REGSDIT++ +  Q
Sbjct:    6 LFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVP-MVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLK-GEVPDNDYLLPLEKAELVREGSDITVLTYSRQ 212          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.809e-29
Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLS 794
            + T GL   FG  RV +TP+ E G  G  +G A  G R + E    ++   A D I+N AAK  Y SG Q  C  +  R P GA    G  H+Q+   ++  VPGL V+ P     AKGLL + IR  +PVVF E + LY  + +    DD++LP+ +A +IREG D+T+V +   +S
Sbjct:  174 KVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCP-IVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYSIGVS 350          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.809e-29
Identity = 72/204 (35.29%), Postives = 110/204 (53.92%), Query Frame = 3
Query:  165 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            L+ A+ + L   ++ DP+               + T G A+++G  R+ +TP+ E    G AIG A  G R + E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NPV+ FE   LY L  E +P+++Y++ L +AE++R G+DIT++
Sbjct:    6 LFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLK-ETIPDNEYLVCLEKAEIVRPGTDITIL 207          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.503e-28
Identity = 76/204 (37.25%), Postives = 108/204 (52.94%), Query Frame = 3
Query:  165 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            L+ A+  AL   ++ DP                + T G  +++G  R+ +TP+ E    G AIG A  G R I E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P   KGLL S IR+ NPV+FFE   LY L+ E + E +Y+L L +AEV+R G+DIT++
Sbjct:    6 LFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLN-ENLIEQEYLLCLEKAEVVRPGNDITIL 207          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.962e-28
Identity = 77/237 (32.49%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   75 LSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPLSEAEVIREGSDITLV 773
            L R  L++ACA +Q +++   G     ++ +  A+N AL   ++ D R +             + + GL  ++G  R+++TP+ E  I G ++G A  G R I E    ++     D I+N AAK  Y S  +F+   +  R   GA       HSQ   A+F H PG+KVV+P     A+GLL + +RD NPV+  E + LY +     PE    D++LP  +A++ R G DIT+V
Sbjct:    9 LLRNGLTSACALEQSVRRLASGT---LNVTVRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVP-IVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIV 241          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.563e-28
Identity = 82/245 (33.47%), Postives = 120/245 (48.98%), Query Frame = 3
Query:   54 LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVG 776
            L++F G +   + S    +  + +++       K + +  A+N A+   ++ D R +             + + GL D+FG  RV +TP+ E G  G A G A  G R I E    ++   A D IVN AA+  Y SG    C  +  R P G        HSQ    ++  +PGLKVV P S   A+GLL + IRDPNPVV  E + LY  +    +E   +D++LP   A+V R G DIT+VG
Sbjct:    4 LQKF-GEIVGTSRSWKLLSSTIAKRYSSSSNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQAC-PIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVG 246          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.272e-27
Identity = 71/225 (31.56%), Postives = 112/225 (49.78%), Query Frame = 3
Query:  147 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            S K + +  A+N AL + +  D + +             + T GL +++G  RV +TP+ E G  G  +G A  G + + E    ++   A D I+N AAK  Y S  Q +   +  R   G     G  HS    +++   PGLKV++P S   A+GLL + IRDP+PVVF E + LY  S     EV +  + LP+ +A++ REG D+T+  +   +    +A
Sbjct:   22 SAKQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISV-PIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKA 245          
The following BLAST results are available for this feature:
BLAST of CX043461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_YEAST1.359e-2937.56Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL1.359e-2934.03Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI3.028e-2936.07Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CHLAT3.954e-2937.80Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO8.809e-2938.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU8.809e-2935.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL1.503e-2837.25Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU1.962e-2832.49Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO2.563e-2833.47Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA1.272e-2731.56Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B12-C23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043461 ID=CX043461; Name=CX043461; organism=Citrus sinensis; type=EST; length=813bp
GCAAACTCCACAACCAAAAATCTTGGCGGAGATTTCACAATATGGCTTCT
GGTTTGAGAAGATTTGTGGGTTCCCTTTCACGGAGAAATCTTTCAACTGC
TTGTGCGAACAAGCAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTG
GCAAGTCTTTGAATTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCT
TTGGAAACTGATCCACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGG
TGGAGTCTTCCGATGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTC
GGGTATTCAATACCCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATT
GGTCTGGCAGCTATGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGA
TTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCA
GATACAGGAGTGGAAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCC
CCTTACGGAGCTGTGGGCCATGGTGGACACTATCACTCGCAATCTCCTGA
AGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCC
CACGACAAGCAAAAGGATTATTGCTGTCATGCATTCGTGATCCGAACCCT
GTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTTTGTCTGTAGAAGAGGT
TCCTGAGGATGATTATATGTTGCCTTTATCAGAGGCAGAGGTGATTCGAG
AAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACTCTCTATCATG
GAGCAGGCCTGTT
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