CX043461

Overview
NameCX043461
Unique NameCX043461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.272e-27
Identity = 73/204 (35.78%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  174 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPLSEAEVIREGSDITLV 773
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P S   AKGL+ S IRD NPVV  E + +Y +  E   E    D+++P+ +A++ R+G+ +T+V
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIV 240          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.661e-27
Identity = 84/244 (34.43%), Postives = 119/244 (48.77%), Query Frame = 3
Query:   54 LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPLSEAEVIREGSDITLV 773
            LR   G L RR   TA A  Q+               +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y +  E  PE    D+++P+ +A++ R+G+ IT+V
Sbjct:   12 LREVSGLLKRRFHWTAPAALQV--------------TVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV 240          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.170e-27
Identity = 74/204 (36.27%), Postives = 107/204 (52.45%), Query Frame = 3
Query:  174 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPLSEAEVIREGSDITLV 773
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y +  E  PE    D+++P+ +A++ R+G+ IT+V
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV 240          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.834e-27
Identity = 75/204 (36.76%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  165 LYSAINQALHIAL-ETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            L+ A+N A+   +   D  A             + T  L  ++G+ RV +TP+ E   VG AIG A  G   + E     +I  AF QI N        SG  ++   + +R P G     G  HSQ  E +F  VPGL++V   +P  AKGLL S IR  NP+ F E   LY L   EVP++DY+LPL +AE++R+G+DIT++
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIP-IVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKA-EVPDNDYVLPLEKAEIVRQGNDITIL 207          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.701e-27
Identity = 73/209 (34.93%), Postives = 108/209 (51.67%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPLSEAEVIREGSDITLV 773
            L +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ E   E    D+++P+ +A++ R+G+ IT+V
Sbjct:   33 LTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVV 240          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 73/209 (34.93%), Postives = 108/209 (51.67%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPLSEAEVIREGSDITLV 773
            L +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ E   E    D+++P+ +A++ R+G+ IT+V
Sbjct:   33 LTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVV 240          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 66/171 (38.60%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  261 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 773
            + T  L  ++G  RV + P+ E    G AIG A  G R I E     ++  AF+QI N  +  +Y SG  FN   + +R P G        HSQ  E+ F  +PGL++V   +   AKGLL S I +  P++F E   LY L    VP+++Y LPL +AEV+R GSD+T+V
Sbjct:   39 KVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNI-PVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLK-GFVPDEEYYLPLDKAEVVRSGSDVTIV 207          
The following BLAST results are available for this feature:
BLAST of CX043461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_BOVIN1.272e-2735.78Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN1.661e-2734.43Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB2.170e-2736.27Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MESVI2.834e-2736.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RAT3.701e-2734.93Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE4.834e-2734.93Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CYACA6.533e-2438.60Pyruvate dehydrogenase E1 component subunit beta O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B12-C23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043461 ID=CX043461; Name=CX043461; organism=Citrus sinensis; type=EST; length=813bp
GCAAACTCCACAACCAAAAATCTTGGCGGAGATTTCACAATATGGCTTCT
GGTTTGAGAAGATTTGTGGGTTCCCTTTCACGGAGAAATCTTTCAACTGC
TTGTGCGAACAAGCAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTG
GCAAGTCTTTGAATTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCT
TTGGAAACTGATCCACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGG
TGGAGTCTTCCGATGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTC
GGGTATTCAATACCCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATT
GGTCTGGCAGCTATGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGA
TTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCA
GATACAGGAGTGGAAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCC
CCTTACGGAGCTGTGGGCCATGGTGGACACTATCACTCGCAATCTCCTGA
AGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCC
CACGACAAGCAAAAGGATTATTGCTGTCATGCATTCGTGATCCGAACCCT
GTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTTTGTCTGTAGAAGAGGT
TCCTGAGGATGATTATATGTTGCCTTTATCAGAGGCAGAGGTGATTCGAG
AAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACTCTCTATCATG
GAGCAGGCCTGTT
back to top