DC900218 | Citrus Genome Database

Overview


Name	DC900218
Unique Name	DC900218
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	837

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 1.163e-71
Identity = 137/184 (74.46%), Postives = 142/184 (77.17%), Query Frame = 1

Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA*SC 591
            MGLT  KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSN I N+  +C
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANC 184

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 3.428e-69
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYI +TCATSG+GLYEGLDWL+N + NK
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

HSP 2 Score: 36.965 bits (84), Expect = 3.428e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 3.428e-69
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYI +TCATSG+GLYEGLDWL+N + NK
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

HSP 2 Score: 36.965 bits (84), Expect = 3.428e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 3.428e-69
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYI +TCATSG+GLYEGLDWL+N + NK
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

HSP 2 Score: 36.965 bits (84), Expect = 3.428e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 3.428e-69
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYI +TCATSG+GLYEGLDWL+N + NK
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

HSP 2 Score: 36.965 bits (84), Expect = 3.428e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 3.428e-69
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYI +TCATSG+GLYEGLDWL+N + NK
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

HSP 2 Score: 36.965 bits (84), Expect = 3.428e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 3.428e-69
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYI +TCATSG+GLYEGLDWL+N + NK
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

HSP 2 Score: 36.965 bits (84), Expect = 3.428e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 9.913e-69
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 1

Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RMLNEDELR AVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYI +TCATSG+GLYEGLDWLS  + N++
Sbjct:   47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181

HSP 2 Score: 36.965 bits (84), Expect = 9.913e-69
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLDAAGKT ILYKLK   IV  IP
Sbjct:   23 VGLDAAGKTTILYKLKLGEIVTTIP 47

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.280e-66
Identity = 126/180 (70.00%), Postives = 135/180 (75.00%), Query Frame = 1

Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MG  F KLF  LF  K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYI +TCATSG+GLYEGLDWLSN + N+
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.280e-66
Identity = 126/180 (70.00%), Postives = 135/180 (75.00%), Query Frame = 1

Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MG  F KLF  LF  K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELR AVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYI +TCATSG+GLYEGLDWLSN + N+
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

The following BLAST results are available for this feature:

BLAST of DC900218 vs. ExPASy Swiss-Prot

BLAST of DC900218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215


Match Name	E-value	Identity	Description
ARF1_SOLTU	1.163e-71	74.46	ADP-ribosylation factor 1 OS=Solanum tuberosum PE=...	[more]
ARF3_TAKRU	3.428e-69	87.31	ADP-ribosylation factor 3 OS=Takifugu rubripes GN=...	[more]
ARF3_RAT	3.428e-69	87.31	ADP-ribosylation factor 3 OS=Rattus norvegicus GN=...	[more]
ARF3_PONAB	3.428e-69	87.31	ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ...	[more]
ARF3_MOUSE	3.428e-69	87.31	ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ...	[more]
ARF3_HUMAN	3.428e-69	87.31	ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ...	[more]
ARF3_BOVIN	3.428e-69	87.31	ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE...	[more]
ARF_DUGJA	9.913e-69	85.93	ADP-ribosylation factor OS=Dugesia japonica PE=2 S...	[more]
ARF2_RAT	4.280e-66	70.00	ADP-ribosylation factor 2 OS=Rattus norvegicus GN=...	[more]
ARF2_MOUSE	4.280e-66	70.00	ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ...	[more]

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Properties


Property Name	Value
Genbank description	DC900218 VSS Citrus sinensis cDNA clone VS28257 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900218 ID=DC900218; Name=DC900218; organism=Citrus sinensis; type=EST; length=837bp
CCCCGTTTTTTGGGTTNTTAAAGTATCCCCACCCGAANAATGGGGCTGAC
TTTCCCAAAGCTGTTCAGCCGGCTCTTTGCCAANAAAAAAATGCGAATTC
TAAGGTTGGTCTTGATGCTGCTGGTAAGACCNCTATCTTGTACAAGCTCA
AGCCTGNANAGATTGTCNCCNCAATTCCCTACCATTGGGTTTAATGTGNA
GACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGGTGGCC
AGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGT
CTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAG
GGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGANATGCAGTGT
TGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCT
GAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTA
CATCCANAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGG
ATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTT
TTTGCGGACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTT
TCTTTTTTAACCCTTTTTGTTTNANACGGTTGGGTTGTTGTGTTGTTTTG
GCCCTAGGATCTTTACAACTATATTGTACTANAANAATTGTTGGTTGGAT
ACATGTACTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACT
AATTTGGTGCNCCACTCATTTGAAATTGTTTTTTTCG