DC900218

Overview
NameDC900218
Unique NameDC900218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.416e-11
Identity = 36/131 (27.48%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  220 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++ L     L+  NK D+P A +  E+   LGL               ++R    ++ S     G G  EG  W+S  I
Sbjct:   64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYG--EGFKWVSQYI 192          

HSP 2 Score: 25.7942 bits (55), Expect = 1.416e-11
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT +L+ LK   +V   P
Sbjct:   26 LGLDNAGKTTLLHMLKDERLVQHQP 50          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.839e-11
Identity = 37/131 (28.24%), Postives = 60/131 (45.80%), Query Frame = 1
Query:  220 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSG--------------EGLYEGLDWLSNNI 570
            I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L++D L     L+  NK D P A +  E+   LGL +       + +    SG               G  EG  WLS  I
Sbjct:   64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          

HSP 2 Score: 25.7942 bits (55), Expect = 1.839e-11
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT +L+ LK   +V   P
Sbjct:   26 LGLDNAGKTTLLHMLKDERLVQHQP 50          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.029e-11
Identity = 36/126 (28.57%), Postives = 59/126 (46.83%), Query Frame = 1
Query:  217 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIXSTCATSGEGLYEGLDWLS 561
            +I F  +D+GG +  R LW  Y  N+ G++F+VDS D  R  E+R  L  +L+  +L    +L+ +NK D+  A++   +    G+  L            QR   +      +  G  +G  WLS
Sbjct:   63 SIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLRSDQRPLEVFPCSVINRFGYTDGFKWLS 188          

HSP 2 Score: 21.9422 bits (45), Expect = 4.029e-11
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLK 152
            VGLD AGK+ +L  LK
Sbjct:   26 VGLDNAGKSTLLAMLK 41          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.235e-11
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIXSTCAT 522
            PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L  +   R  ++  T  T
Sbjct:   49 PTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALALSEVGNDRKMFLFGTYLT 162          

HSP 2 Score: 25.0238 bits (53), Expect = 5.235e-11
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 3
Query:   69 PALCQXKNANSKV-GLDAAGKTXILYKL 149
            PA  + KN    V GLD AGKT +L+ L
Sbjct:   11 PAWPEEKNKQILVLGLDGAGKTSVLHSL 38          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.764e-11
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDL 429
            PT GFNV ++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L+    L+ ANKQDL
Sbjct:   58 PTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
The following BLAST results are available for this feature:
BLAST of DC900218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
SAR1A_ARATH1.416e-1127.48GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1B_BRACM1.839e-1128.24GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_GIALA4.029e-1128.57GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
ARL9_HUMAN5.235e-1132.76ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
ARLX_DICDI8.764e-1137.65ADP-ribosylation factor-like protein DDB_G0292332 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900218 VSS Citrus sinensis cDNA clone VS28257 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900218 ID=DC900218; Name=DC900218; organism=Citrus sinensis; type=EST; length=837bp
CCCCGTTTTTTGGGTTNTTAAAGTATCCCCACCCGAANAATGGGGCTGAC
TTTCCCAAAGCTGTTCAGCCGGCTCTTTGCCAANAAAAAAATGCGAATTC
TAAGGTTGGTCTTGATGCTGCTGGTAAGACCNCTATCTTGTACAAGCTCA
AGCCTGNANAGATTGTCNCCNCAATTCCCTACCATTGGGTTTAATGTGNA
GACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGGTGGCC
AGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGT
CTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAG
GGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGANATGCAGTGT
TGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCT
GAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTA
CATCCANAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGG
ATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTT
TTTGCGGACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTT
TCTTTTTTAACCCTTTTTGTTTNANACGGTTGGGTTGTTGTGTTGTTTTG
GCCCTAGGATCTTTACAACTATATTGTACTANAANAATTGTTGGTTGGAT
ACATGTACTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACT
AATTTGGTGCNCCACTCATTTGAAATTGTTTTTTTCG
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