DC900218

Overview
NameDC900218
Unique NameDC900218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.575e-60
Identity = 115/181 (63.54%), Postives = 133/181 (73.48%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL   KLFS LF  K+                             PTIGFNV TV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR RI EAR+ + RMLNEDELR AV LVFANKQDLP AM+AAEIT+KLGLHS+R R W+I STCATSGEGLYEGL+WLSNN+ N++
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.687e-60
Identity = 116/180 (64.44%), Postives = 128/180 (71.11%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSRLF  K+                             PTIGFNV TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EA +EL +ML EDELR AVLLVFANKQDLPNAM  +E+TDKL L +LR R WY+ +TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.333e-59
Identity = 112/180 (62.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSR+F  K+                             PTIGFNV TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELR AVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+ +TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.333e-59
Identity = 112/180 (62.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSR+F  K+                             PTIGFNV TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELR AVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+ +TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.333e-59
Identity = 112/180 (62.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSR+F  K+                             PTIGFNV TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELR AVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+ +TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 2.275e-59
Identity = 114/180 (63.33%), Postives = 127/180 (70.56%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSRLF  K+                             PTIGFNV TVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +ML  DELR AVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+ +TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 2.275e-59
Identity = 114/180 (63.33%), Postives = 127/180 (70.56%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSRLF  K+                             PTIGFNV TVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +ML  DELR AVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+ +TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.067e-59
Identity = 110/180 (61.11%), Postives = 129/180 (71.67%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   +FSR+F  K+                             PTIGFNV TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ +EL +ML EDELR AVLLVFANKQD+PNAM  +E+TDKLGL +LR R WY+ +TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 5.067e-59
Identity = 113/179 (63.13%), Postives = 130/179 (72.63%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIAN 576
            MGL   KLFS LF  K+                             PTIGFNV TV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR RI EAR+ + RMLNEDELR A  LVFANKQDLP AM+AAEIT+KLGLHS+R R W+I +TCATSGEGLYEGL+WLSN++ N
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.129e-58
Identity = 114/180 (63.33%), Postives = 126/180 (70.00%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGLT   LFSRLF  K+                             PTIGFNV TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+ AVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+ +TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
The following BLAST results are available for this feature:
BLAST of DC900218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF2_YEAST1.575e-6063.54ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF4_XENLA2.687e-6064.44ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF5_RAT1.333e-5962.22ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.333e-5962.22ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.333e-5962.22ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_PONAB2.275e-5963.33ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN2.275e-5963.33ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF5_CHICK5.067e-5961.11ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF1_YEAST5.067e-5963.13ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF4_RAT1.129e-5863.33ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900218 VSS Citrus sinensis cDNA clone VS28257 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900218 ID=DC900218; Name=DC900218; organism=Citrus sinensis; type=EST; length=837bp
CCCCGTTTTTTGGGTTNTTAAAGTATCCCCACCCGAANAATGGGGCTGAC
TTTCCCAAAGCTGTTCAGCCGGCTCTTTGCCAANAAAAAAATGCGAATTC
TAAGGTTGGTCTTGATGCTGCTGGTAAGACCNCTATCTTGTACAAGCTCA
AGCCTGNANAGATTGTCNCCNCAATTCCCTACCATTGGGTTTAATGTGNA
GACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGGTGGCC
AGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGT
CTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAG
GGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGANATGCAGTGT
TGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCT
GAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTA
CATCCANAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGG
ATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTT
TTTGCGGACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTT
TCTTTTTTAACCCTTTTTGTTTNANACGGTTGGGTTGTTGTGTTGTTTTG
GCCCTAGGATCTTTACAACTATATTGTACTANAANAATTGTTGGTTGGAT
ACATGTACTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACT
AATTTGGTGCNCCACTCATTTGAAATTGTTTTTTTCG
back to top