DC900218

Overview
NameDC900218
Unique NameDC900218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.478e-50
Identity = 99/182 (54.40%), Postives = 123/182 (67.58%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MG    K+F +LF+ K+                             PTIGFNV TVEYKNI+FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D +  RI +A++ELH +L EDELR A LLVFANKQDLP AM+  ++T++LGL  L++R WYI  TCA SG+GLY+GLDWLS+ I +K
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.521e-50
Identity = 93/170 (54.71%), Postives = 116/170 (68.24%), Query Frame = 1
Query:   58 KLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNN 567
            K+FS++F  K+                             PT+GFNV TV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+  +CA SG+GLYEGL WL++N
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSN 172          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.358e-46
Identity = 75/134 (55.97%), Postives = 102/134 (76.12%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV T+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY+    A   +G+YEG DW++N++ NK
Sbjct:   55 PTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          

HSP 2 Score: 32.3426 bits (72), Expect = 6.358e-46
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGK+ +LYKLK   +V  IP
Sbjct:   31 IGLDGAGKSTLLYKLKLGDVVSTIP 55          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 6.425e-46
Identity = 88/177 (49.72%), Postives = 112/177 (63.28%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            MG+ F ++FS +F  K+                             PTIGFNV TV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.425e-46
Identity = 93/172 (54.07%), Postives = 111/172 (64.53%), Query Frame = 1
Query:   52 FPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNN 567
            F K FSRLF+ K+                             PT+GFNV TV YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +RI EAR ELHR++++ E+R  +LLV ANKQDLP A++ A+ITD L L  L+ R W +  TCA +G+GL EGL WLS N
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.869e-45
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            MG+ F ++FS +F  K+                             PTIGFNV TV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.070e-45
Identity = 82/132 (62.12%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PTIGFNV TVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELR A+LL+FANKQD+  A++  EIT+ L LH L   R WYI    A SG GLYEGLDWLS  +
Sbjct:  434 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          

HSP 2 Score: 30.8018 bits (68), Expect = 3.070e-45
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT IL+KLK    +  IP
Sbjct:  410 LGLDGAGKTTILFKLKQDEFMQPIP 434          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.070e-45
Identity = 82/132 (62.12%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PTIGFNV TVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELR A+LL+FANKQD+  A++  EIT+ L LH L   R WYI    A SG GLYEGLDWLS  +
Sbjct:  434 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          

HSP 2 Score: 30.8018 bits (68), Expect = 3.070e-45
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT IL+KLK    +  IP
Sbjct:  410 LGLDGAGKTTILFKLKQDEFMQPIP 434          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.554e-44
Identity = 81/132 (61.36%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PTIGFNV TVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELR A+LL+FANKQD+  A++  EIT+ L LH L   R WYI    A SG GLYEGLDWLS  +
Sbjct:  414 PTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545          

HSP 2 Score: 30.8018 bits (68), Expect = 2.554e-44
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT IL+KLK    +  IP
Sbjct:  390 LGLDGAGKTTILFKLKQDEFMQPIP 414          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.270e-43
Identity = 73/134 (54.48%), Postives = 99/134 (73.88%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PTIGFNV T+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S++ R WY+    A   +G+YEG DW++N++ NK
Sbjct:   55 PTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          

HSP 2 Score: 30.8018 bits (68), Expect = 1.270e-43
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGK+ +L+KLK   +V  IP
Sbjct:   31 IGLDGAGKSTLLFKLKLGDVVLTIP 55          
The following BLAST results are available for this feature:
BLAST of DC900218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF_GIALA1.478e-5054.40ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_XENLA2.521e-5054.71ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARFJ_DICDI6.358e-4655.97ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF3_ARATH6.425e-4649.72ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF2_SCHPO6.425e-4654.07Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF1_BRARP1.869e-4549.15ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARD1_MOUSE3.070e-4562.12GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN3.070e-4562.12GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARD1_RAT2.554e-4461.36GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARFK_DICDI1.270e-4354.48ADP-ribosylation factor K OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionDC900218 VSS Citrus sinensis cDNA clone VS28257 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900218 ID=DC900218; Name=DC900218; organism=Citrus sinensis; type=EST; length=837bp
CCCCGTTTTTTGGGTTNTTAAAGTATCCCCACCCGAANAATGGGGCTGAC
TTTCCCAAAGCTGTTCAGCCGGCTCTTTGCCAANAAAAAAATGCGAATTC
TAAGGTTGGTCTTGATGCTGCTGGTAAGACCNCTATCTTGTACAAGCTCA
AGCCTGNANAGATTGTCNCCNCAATTCCCTACCATTGGGTTTAATGTGNA
GACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGGTGGCC
AGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGT
CTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAG
GGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGANATGCAGTGT
TGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCT
GAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTA
CATCCANAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGG
ATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTT
TTTGCGGACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTT
TCTTTTTTAACCCTTTTTGTTTNANACGGTTGGGTTGTTGTGTTGTTTTG
GCCCTAGGATCTTTACAACTATATTGTACTANAANAATTGTTGGTTGGAT
ACATGTACTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACT
AATTTGGTGCNCCACTCATTTGAAATTGTTTTTTTCG
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