DC900218

Overview
NameDC900218
Unique NameDC900218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.140e-33
Identity = 61/131 (46.56%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PTIG NV  +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+I + CA +GEGL +GL+W+ + +
Sbjct:   46 PTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          

HSP 2 Score: 27.335 bits (59), Expect = 6.140e-33
Identity = 13/25 (52.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLD AGKT ILY+     +V   P
Sbjct:   22 VGLDNAGKTTILYQFSMNEVVHTSP 46          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.140e-33
Identity = 61/131 (46.56%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PTIG NV  +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+I + CA +GEGL +GL+W+ + +
Sbjct:   46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          

HSP 2 Score: 27.335 bits (59), Expect = 6.140e-33
Identity = 13/25 (52.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLD AGKT ILY+     +V   P
Sbjct:   22 VGLDNAGKTTILYQFSMNEVVHTSP 46          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.140e-33
Identity = 61/131 (46.56%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PTIG NV  +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+I + CA +GEGL +GL+W+ + +
Sbjct:   46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          

HSP 2 Score: 27.335 bits (59), Expect = 6.140e-33
Identity = 13/25 (52.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGLD AGKT ILY+     +V   P
Sbjct:   22 VGLDNAGKTTILYQFSMNEVVHTSP 46          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.064e-32
Identity = 72/177 (40.68%), Postives = 103/177 (58.19%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            MGL F KL+S LF  ++                             PTIG NV  +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+I S CA +GEGL +GL+W+++ I
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.064e-32
Identity = 72/177 (40.68%), Postives = 103/177 (58.19%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            MGL F KL+S LF  ++                             PTIG NV  +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+I S CA +GEGL +GL+W+++ I
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.356e-32
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PT GFN+ +V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +LVFANKQDL  A  AAEI + L LH++R R W I S  A +GEG+ +G++W+  N+  K
Sbjct:   47 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          

HSP 2 Score: 21.9422 bits (45), Expect = 1.356e-32
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT +L +L    I    P
Sbjct:   23 LGLDNAGKTTLLKQLASEDISHITP 47          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.766e-32
Identity = 57/131 (43.51%), Postives = 90/131 (68.70%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNI 570
            PT+G N+    Y+NI   +WD+GGQD +R  W  Y+ NTQ +I V+DS DR R+   ++EL +ML  + L+ +++L++ANKQDL +AM+  E++  L LHS++   ++I + CA +G+GL  GLDWL ++I
Sbjct:   50 PTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI 180          

HSP 2 Score: 28.1054 bits (61), Expect = 1.766e-32
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            VGL+AAGKT  LYKL    +V   P
Sbjct:   26 VGLNAAGKTTTLYKLLLDEVVSTTP 50          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.299e-32
Identity = 59/134 (44.03%), Postives = 92/134 (68.66%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PT+GF++ TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DR+R+++  +EL ++L E+ L  A LLV ANK DLP A++   I   L LHS++  HW I S CA SG+ L + + WL +++ ++
Sbjct:   46 PTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWLCDDVGSR 179          

HSP 2 Score: 20.4014 bits (41), Expect = 2.299e-32
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  105 VGLDAAGKTXILYK 146
            +GLD AGKT ++ K
Sbjct:   22 LGLDNAGKTTLMKK 35          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.300e-32
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PT GFN+ +V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W I S  A +GEG+ +G++W+  N+  K
Sbjct:   47 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180          

HSP 2 Score: 21.9422 bits (45), Expect = 2.300e-32
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT +L +L    I    P
Sbjct:   23 LGLDNAGKTTLLKQLASEDISHITP 47          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.995e-32
Identity = 63/134 (47.01%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  178 PTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            PT GFN+ +V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +L+FANKQDL  A  A+EI + L LH++R R W I S  A +G+G+ +G++W+  N+  K
Sbjct:   47 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGQGVQDGMNWVCKNVNAK 180          

HSP 2 Score: 21.9422 bits (45), Expect = 2.995e-32
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  105 VGLDAAGKTXILYKLKPXXIVXXIP 179
            +GLD AGKT +L +L    I    P
Sbjct:   23 LGLDNAGKTTLLKQLASEDISHITP 47          
The following BLAST results are available for this feature:
BLAST of DC900218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARL5A_RAT6.140e-3346.56ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN6.140e-3346.56ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN6.140e-3346.56ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL5B_MOUSE1.064e-3240.68ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN1.064e-3240.68ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL3_RAT1.356e-3249.25ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL5_DICDI1.766e-3243.51ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL2_CAEEL2.299e-3244.03ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL3_PIG2.300e-3247.76ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_XENLA2.995e-3247.01ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionDC900218 VSS Citrus sinensis cDNA clone VS28257 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900218 ID=DC900218; Name=DC900218; organism=Citrus sinensis; type=EST; length=837bp
CCCCGTTTTTTGGGTTNTTAAAGTATCCCCACCCGAANAATGGGGCTGAC
TTTCCCAAAGCTGTTCAGCCGGCTCTTTGCCAANAAAAAAATGCGAATTC
TAAGGTTGGTCTTGATGCTGCTGGTAAGACCNCTATCTTGTACAAGCTCA
AGCCTGNANAGATTGTCNCCNCAATTCCCTACCATTGGGTTTAATGTGNA
GACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGGTGGCC
AGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGT
CTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAG
GGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGANATGCAGTGT
TGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCT
GAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTA
CATCCANAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGG
ATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTT
TTTGCGGACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTT
TCTTTTTTAACCCTTTTTGTTTNANACGGTTGGGTTGTTGTGTTGTTTTG
GCCCTAGGATCTTTACAACTATATTGTACTANAANAATTGTTGGTTGGAT
ACATGTACTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACT
AATTTGGTGCNCCACTCATTTGAAATTGTTTTTTTCG
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