DC900216

Overview
NameDC900216
Unique NameDC900216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:351..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:  102 FDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:   88 FQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 178
            F+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:   97 FELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 178
            F+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:   97 FELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:   92 FDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:  102 FDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:   93 FDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
The following BLAST results are available for this feature:
BLAST of DC900216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
SKP1_CHICK5.796e-1972.58S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO5.796e-1972.58S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN5.796e-1972.58S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK4_ARATH1.093e-1766.13SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH1.428e-1769.35SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
SKP1B_DICDI2.435e-1769.49SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI2.435e-1769.49SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK9_ARATH1.209e-1664.52SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.578e-1661.29SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK13_ARATH1.578e-1666.13SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionDC900216 VSS Citrus sinensis cDNA clone VS28252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900216 ID=DC900216; Name=DC900216; organism=Citrus sinensis; type=EST; length=405bp
CTTCGATCTCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTGG
ACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGAG
GAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGGA
AGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTTC
AACAAAGACAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTAA
CATGTAGATGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGTACTT
TCGAACTTATTAGCTGTTTGAAATGTAAATAATAGTCGGTTCTGGTGGAA
CTGGTAGCAGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGACCGT
TGGAT
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