DC900216

Overview
NameDC900216
Unique NameDC900216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:   91 FDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXXNQWAFE 187
            F LILAANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDFT           N WAFE
Sbjct:  105 FKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.977e-15
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 181
            F+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP         N+WA
Sbjct:   99 FEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 181
            +++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct:  132 YEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDFTP         N W FE
Sbjct:  129 FDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND T          NQWAF+
Sbjct:   87 FDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 184
            F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDFTP         N W F
Sbjct:   96 FKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:    8 LILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND+TP         N WAFE
Sbjct:  108 LILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.023e-12
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND TP         N+WAFE
Sbjct:   91 FALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
The following BLAST results are available for this feature:
BLAST of DC900216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ASK10_ARATH1.336e-1564.52SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK15_ARATH2.279e-1565.08SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO2.977e-1560.00Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
SKP1_YEAST5.078e-1560.00Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK19_ARATH5.078e-1558.06SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH5.614e-1455.22SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK18_ARATH7.332e-1459.02SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK16_ARATH7.332e-1458.33SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH4.023e-1256.45SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionDC900216 VSS Citrus sinensis cDNA clone VS28252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900216 ID=DC900216; Name=DC900216; organism=Citrus sinensis; type=EST; length=405bp
CTTCGATCTCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTGG
ACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGAG
GAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGGA
AGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTTC
AACAAAGACAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTAA
CATGTAGATGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGTACTT
TCGAACTTATTAGCTGTTTGAAATGTAAATAATAGTCGGTTCTGGTGGAA
CTGGTAGCAGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGACCGT
TGGAT
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