DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_FRAT1 (Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=hemE PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 79/239 (33.05%), Postives = 133/239 (55.65%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREF-DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK---HILNLGHGI 705
            IKG GPV  +PI +  ++D+++   D   S+ YV  A+      +N    ++GF G+P+TLA+Y++EG  SK F+K++++ ++ P+++H+LL++       Y+  Q   GA +V IFD+W   L    ++ FSL Y++ I   VKQ   ++ ++ +  G     E +     D V +DW+V + + R R+G    +QGN DP  L+GSK  I   +   +      K   +I+NLGHGI
Sbjct:   88 IKGTGPVFSEPIQSQKDLDKLKSIEDSIGSLDYVYNAVKTTSSAIN--VPLIGFTGSPWTLAAYMIEGSGSKQFNKLRKMMYANPQLMHSLLQRLADITIIYLLEQVKAGASSVMIFDTWGGILPLEHYKNFSLKYMEYIAKNVKQ-KINIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSKQSIRETVRANIEFIQSDKLNNYIVNLGHGI 323          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_FRATN (Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp. novicida (strain U112) GN=hemE PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.890e-35
Identity = 79/239 (33.05%), Postives = 132/239 (55.23%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREF-DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK---HILNLGHGI 705
            IKG GPV  +PI +  ++D+++   D   S+ YV  A+      +N    ++GF G+P+TLA+Y++EG  SK F+K++++ ++ P+++H+LL++       Y+  Q   GA  V IFD+W   L    ++ FSL Y++ I   VKQ   ++ ++ +  G     E +     D V +DW+V + + R R+G    +QGN DP  L+GSK  I   +   +      K   +I+NLGHGI
Sbjct:   88 IKGTGPVFSEPIQSQKDLDKLKSIEDSIGSLDYVYNAVKTTSSTIN--VPLIGFTGSPWTLAAYMIEGSGSKQFNKLRKMMYANPQLMHSLLQRLADITIIYLLEQVKAGASCVMIFDTWGGILPLEHYKNFSLKYMEYIAKNVKQ-KINIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSKQSIRETVRANIEFIQSDKLNNYIVNLGHGI 323          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ACIAC (Uroporphyrinogen decarboxylase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=hemE PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.636e-35
Identity = 90/265 (33.96%), Postives = 141/265 (53.21%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQT---HPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRL-----GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR---------WKHILNLGHGIKVGTPEENVAHFFE 747
            +G+GP     +  +A V ++   D E+ + YV  A+T +R  ++    ++GF G+P+TLA Y+VEG  S  +  +K L +S+P ++H +L     ++A Y+  Q D GAQAV +FDSW   L+   F+EFSL Y  +++  +K+T     D+  I++  G    LE +     +V+ LDWT ++A  R  +     GP  A+QGN+DP  LF   + I  +    + + G            HI NLGHGI   TP E+VA   E
Sbjct:   95 EGEGPRFARVVRDEAAVAELAVPDMEK-LRYVFDAVTSIRRALDGRVPLIGFSGSPWTLACYMVEGSGSDDYRLVKTLMYSRPDLMHRILAINADAVAAYLNAQIDAGAQAVMVFDSWGGVLADGAFQEFSLAYTTRVLAQLKRTGVDGTDVPRIVFTKGGALWLEDMKGLDCEVLGLDWTANLARARALVGGAVGGPGKALQGNIDPNVLFAPPEAIAAQARAVLDRFGAPHTDRGTTGPTHIFNLGHGISQHTPPEHVAALVE 358          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_HELHP (Uroporphyrinogen decarboxylase OS=Helicobacter hepaticus GN=hemE PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.667e-35
Identity = 83/253 (32.81%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAK 756
            + G+GP     I+  ++V  ++E    + + YV   L+ +R ++  E A++GF G+P+TLA+Y++EG  SK ++K K + + +P +L  LL   +  +  Y++ Q   GA AVQIFDSWA+ L    + EFS  Y+K I   +K  +P + ++L+  G  G L+++     DV  +DW   MA  +  LG    +QGN++P  L+  K+ +   I++ ++  G+ K HI NLGHG+    P EN     ++ +
Sbjct:   86 LAGEGPKFNRTISNVSDVVNLQE-GAHKRLTYVYDTLSSIRSKLPKEKALIGFCGSPWTLATYMIEGQGSKTYAKSKAMLYKEPYILKTLLETLSEELKLYLEGQIRAGANAVQIFDSWASALECEVYFEFSWKYMKDIAQYIKGKYPHIPVMLFPKGIAGYLDKID-GCFDVFGVDWGTPMALAKSYLGTKYVLQGNLEPSRLY-DKESMERGIDEILKIMGKEKGHIFNLGHGMLPDLPRENAIALVQMVR 335          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_FRATM (Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=hemE PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.667e-35
Identity = 79/239 (33.05%), Postives = 132/239 (55.23%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREF-DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK---HILNLGHGI 705
            IKG GPV  +PI +  ++D+++   D   S+ YV  A+      +N    ++GF G+P+TLA+Y++EG  SK F+K++++ ++ P+++H+LL++       Y+  Q   GA +V IFD+W   L    ++ FSL Y + I   VKQ   ++ ++ +  G     E +     D V +DW+V + + R R+G    +QGN DP  L+GSK  I   +   +      K   +I+NLGHGI
Sbjct:   88 IKGTGPVFSEPIQSQKDLDKLKSIEDSIGSLDYVYNAVKTTSSAIN--VPLIGFTGSPWTLAAYMIEGSGSKQFNKLRKMMYANPQLMHSLLQRLADITIIYLLEQVKAGASSVMIFDTWGGILPLEHYKNFSLKYKEYIAKNVKQ-KINIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSKQSIRETVRANIEFIQSDKLNNYIVNLGHGI 323          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_STACT (Uroporphyrinogen decarboxylase OS=Staphylococcus carnosus (strain TM300) GN=hemE PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.132e-34
Identity = 84/234 (35.90%), Postives = 128/234 (54.70%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA-GRWKHILNLGHGI 705
            G GPVI + I T  +V+++ + DP+  VPYV   + +L EE  N   ++GFVGAPFTLASY++EGG SK++   K + F       AL+         Y   Q + GA+ +QIFDSW   L+ VDF  +  P +++++  +K  H D+ +IL+   +  L+E      +DV+ +DW   + E     G    +QGN+DP  L    D I  R++  + +     KHI NLGHG+
Sbjct:   92 GIGPVISNTIKTVQDVEKLGQIDPKRDVPYVLDTIKLLTEEKLN-VPLIGFVGAPFTLASYMIEGGPSKNYHFTKAMMFRDEATWFALMDHLVDMSITYASAQIEAGAELIQIFDSWIGALNAVDFNYYIKPSMERLIKGIKAQH-DVPIILFGVNATHLIEEWNNLPIDVLGIDWRTTIKE-TSDSGVAKTIQGNLDPSLLLAPWDVIQPRLDKILDEGMQHGKHIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ACISJ (Uroporphyrinogen decarboxylase OS=Acidovorax sp. (strain JS42) GN=hemE PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.132e-34
Identity = 87/265 (32.83%), Postives = 142/265 (53.58%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQT---HPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRL-----GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR---------WKHILNLGHGIKVGTPEENVAHFFE 747
            +G+GP     +  +A+V  +   D ++ + YV  A+T +R  +N    ++GF G+P+TLA Y+VEG  S  +  +K L +S+P ++H +L     ++A Y+  Q D GAQAV +FDSW   L+   F++FSL Y ++++  +K+T     D+  I++  G G  L+ +     +V+ LDWT  + + R  +     GP  A+QGN+DP  LF   + +  ++   +   G            HI NLGHGI   TP E+VA   E
Sbjct:   95 EGEGPRFAKAVRDEADVAALAVPDLDK-LRYVFDAVTSIRRALNGRVPLIGFSGSPWTLACYMVEGKGSDDYRLVKTLMYSRPDLMHRILAVNADAVAAYLNAQIDAGAQAVMVFDSWGGVLADGCFQQFSLEYTRRVLAQLKRTGVDGQDVPRIVFTKGGGIWLDDMKDIDCEVLGLDWTAHLGKARAIVGGQVGGPGKALQGNIDPNVLFAPPEAVAAQVRAVLDSFGTPHTDKTTTGPTHIFNLGHGISQFTPPEHVAALVE 358          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHORT (Uroporphyrinogen decarboxylase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hemE PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.478e-34
Identity = 88/255 (34.51%), Postives = 139/255 (54.51%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLER-LALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 765
            +G+GPV+ DP+ + A+V+ +      E +  V + +  L   + +  A++GF GAP+T+A+Y++EGGSSK FS  K   +S+P    AL+    ++   Y+  Q D GA+A+QIFD+WA  L   +F  + +  + +I   + +  P + +I +  G+G L E  +  TGVD V LD +V +A   + L P   VQGN+DP  L      +   +   +   G    I NLGHGI   TP ENVA   ++ +A R
Sbjct:   95 QGEGPVL-DPLTSRADVEALEPGKLRERLGPVFETVRGLASAIPSTTALIGFAGAPWTVATYMLEGGSSKDFSVAKSWIYSRPDDFAALMEVLISATTDYLIAQIDAGAEAIQIFDTWAGVLPETEFHRWVIEPIGRITRALHEQRPGVPVIGFPKGAGVLYETFIRETGVDGVGLDASVPLAWAAKTLQPLCTVQGNMDPLLLVEGGPLMEQAVKRLLDTLGHGPFIFNLGHGIVPQTPPENVARLIDLVRAPR 348          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHOP5 (Uroporphyrinogen decarboxylase OS=Rhodopseudomonas palustris (strain BisA53) GN=hemE PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.478e-34
Identity = 82/254 (32.28%), Postives = 141/254 (55.51%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLER-LALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 765
            G+GP + DP+++  +V  + +      +  V  AL I R E+  E  ++GF G+PFT+A+Y+V G  +   +  + +A+  P     ++     S  +Y+  Q + GA+ +QIFD+WA  L P +FE +S+   ++IV+ V++  P   +I +  G+G +L   +  TGVD VS+DWT + +  R ++   V VQGN+DP  L      +   ++D ++     +HI NLGHGI+   PE  +AH  ++ K +R
Sbjct:   95 GEGPRL-DPLDSPDKVSTLTKAIDLSKLQAVFDALRITRRELPPETTLIGFCGSPFTVATYMVAGHGTPDQAPARNMAYQHPGAFAKIIDVLVESSIQYLLAQLEAGAEVLQIFDTWAGVLPPREFERWSIEPTRRIVEGVRKVKPGTKIIGFPRGAGAMLPAFVERTGVDGVSIDWTAEPSFVREKVQSKVVVQGNLDPLVLIAGGAALDEAVDDVLKNFSGGRHIFNLGHGIQ---PETPIAHVEQMLKRVR 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_DIAST (Uroporphyrinogen decarboxylase OS=Diaphorobacter sp. (strain TPSY) GN=hemE PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.478e-34
Identity = 88/265 (33.21%), Postives = 141/265 (53.21%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQT---HPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRL-----GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR---------WKHILNLGHGIKVGTPEENVAHFFE 747
            +G+GP     +  +A+V  +   D ++ + YV  A+T +R  +N    ++GF G+P+TLA Y+VEG  S  +  +K L +S+P ++H +L     ++A Y+  Q D GAQAV +FDSW   L+   F++FSL Y ++++  +K+T     D+  I++  G G  L+ +     +V+ LDWT  + + R  +     GP  A+QGN+DP  LF     I  ++   +   G            HI NLGHGI   TP E+VA   E
Sbjct:   95 EGEGPRFAKAVRDEADVAALAVPDLDK-LRYVFDAVTSIRRALNGRVPLIGFSGSPWTLACYMVEGKGSDDYRLVKTLMYSRPDLMHRILAVNADAVAAYLNAQIDAGAQAVMVFDSWGGVLADGCFQDFSLEYTRRVLAQLKRTGVDGQDVPRIVFTKGGGIWLDDMKDIDCEVLGLDWTAHLGKARAIVGGQVGGPGKALQGNIDPNVLFAPSAQIVTQVRAVLDSFGTPHTDKTTTGPTHIFNLGHGISQFTPPEHVAALVE 358          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_FRAT12.979e-3533.05Uroporphyrinogen decarboxylase OS=Francisella tula... [more]
DCUP_FRATN3.890e-3533.05Uroporphyrinogen decarboxylase OS=Francisella tula... [more]
DCUP_ACIAC6.636e-3533.96Uroporphyrinogen decarboxylase OS=Acidovorax avena... [more]
DCUP_HELHP8.667e-3532.81Uroporphyrinogen decarboxylase OS=Helicobacter hep... [more]
DCUP_FRATM8.667e-3533.05Uroporphyrinogen decarboxylase OS=Francisella tula... [more]
DCUP_STACT1.132e-3435.90Uroporphyrinogen decarboxylase OS=Staphylococcus c... [more]
DCUP_ACISJ1.132e-3432.83Uroporphyrinogen decarboxylase OS=Acidovorax sp. (... [more]
DCUP_RHORT1.478e-3434.51Uroporphyrinogen decarboxylase OS=Rhodospirillum r... [more]
DCUP_RHOP51.478e-3432.28Uroporphyrinogen decarboxylase OS=Rhodopseudomonas... [more]
DCUP_DIAST1.478e-3433.21Uroporphyrinogen decarboxylase OS=Diaphorobacter s... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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