DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_CARHZ (Uroporphyrinogen decarboxylase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=hemE PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.998e-56
Identity = 113/250 (45.20%), Postives = 161/250 (64.40%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHILNLGHGIKVGTPEENVAHFFEV 750
            + +GPVI +P+ T  +V +VR   PEE VPYV +A+ ILR E+  +  ++GF GAPFTLASY++EGG SK++ + KRL +  P+  H LL K   S  +Y++ Q   GAQAVQ+FDSW   LSP D+E++ LP+ K + D +K+T   + +I +A+ +G +LE +A  G DV+ LDW V +    + +G D  VQGN+DP ALF  K+ I  ++ + + KAG R  HI NLGHGI   TP EN  +  EV
Sbjct:   88 RDEGPVIENPVRTIVDVKKVRVITPEEDVPYVLEAIKILRRELAGKVPLIGFSGAPFTLASYIIEGGGSKNYIQCKRLMWEAPEAWHELLGKIAESTVRYLKAQIAAGAQAVQVFDSWVGTLSPEDYEKYVLPHSKYVFDNLKET--GVPVIHFANNAGSMLELVAAAGGDVIGLDWRVSLDRAWQTVGFDRGVQGNLDPVALFAPKEVIRQKVKEILIKAGKRPGHIFNLGHGIHKETPVENAQYLVEV 335          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYXXD (Uroporphyrinogen decarboxylase OS=Myxococcus xanthus (strain DK 1622) GN=hemE PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.519e-55
Identity = 110/232 (47.41%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   10 KGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI 705
            KGP   DP+ + A++D++   DP E   +V +A+   R+ +N+   V+GF GAPFTLA+Y+VEGG SK +  IKRL F QP++ H L  K T ++  Y++ Q + GA  VQIFDSW   LSP D+E F +PYLK++V  +K T   + +I++  G    L  L  TG DVV LDWT+ M EGR+ LGPDVAVQGN+DP  LF  ++ +  R+ D +R+AG   HI NLGHGI
Sbjct:   89 KGPHFPDPVRSAADIDKLGVPDPVEGTGFVAEAIRRTRKALNDSVPVIGFAGAPFTLAAYMVEGGGSKSYILIKRLMFEQPELAHRLFGKLTDTLIPYLKMQVEAGASIVQIFDSWGGALSPWDYERFCIPYLKRMVSELKAT--GVPVIVFGVGMSSHLSLLKSTGADVVGLDWTLPMDEGRKVLGPDVAVQGNLDPLHLFLPREELDGRVKDILRRAGPEGHIFNLGHGI 318          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SERP5 (Uroporphyrinogen decarboxylase OS=Serratia proteamaculans (strain 568) GN=hemE PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.053e-52
Identity = 105/254 (41.34%), Postives = 155/254 (61.02%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAKA 759
            G+GP    PI + A+VD++  FDPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+K+K++ +++P  LH LL K   S+  Y+  Q   GAQ+V +FD+W   L+  D+ EFSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+ S + I   +   +   G  + H+ NLGHGI    P EN   F E   A
Sbjct:   94 GEGPRFSSPITSRADVDKLPAFDPEVELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKLKKMMYAEPATLHLLLDKLADSVILYLNAQIKAGAQSVMVFDTWGGVLTGRDYREFSLHYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWTTDIADARRRVGDKVALQGNMDPSMLYASPERIGQEVETILAGFGHGEGHVFNLGHGIHPDVPPENAGAFVEAVHA 347          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBCH (Uroporphyrinogen decarboxylase OS=Vibrio cholerae GN=hemE PE=3 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 104/251 (41.43%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR--WKHILNLGHGIKVGTPEENVAHFFE 747
            G+GPV   PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +S+P VLHALL K   S+  Y+  Q   GAQAV +FD+W   L+P D+++FSL Y+ +IVD + + +    + + L+    G  LE++A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+     I   +   +   G+    H+ NLGHGI +  P EN   F E
Sbjct:   94 GEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSILYAPAPRIREEVASILAGFGQGGTGHVFNLGHGIHLDVPPENAGVFVE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBC3 (Uroporphyrinogen decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=hemE PE=3 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 104/251 (41.43%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR--WKHILNLGHGIKVGTPEENVAHFFE 747
            G+GPV   PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +S+P VLHALL K   S+  Y+  Q   GAQAV +FD+W   L+P D+++FSL Y+ +IVD + + +    + + L+    G  LE++A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+     I   +   +   G+    H+ NLGHGI +  P EN   F E
Sbjct:   94 GEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSILYAPAPRIREEVASILAGFGQGGTGHVFNLGHGIHLDVPPENAGVFVE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ACTP7 (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=hemE PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.058e-51
Identity = 105/250 (42.00%), Postives = 155/250 (62.00%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP--DLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ ++ PK+LHALL K   S+  Y+  Q   GAQAV +FD+W   L+  +++EFSL Y+ +IVD + + +    + + L+  G G  LE +A TG D V LDWTVD+A+ RRR+G  VA+QGN+DP  L+   + I   +   +   G+   H+ NLGHGI    PE++   F +
Sbjct:   94 GEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYADPKILHALLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHNEYKEFSLRYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIADARRRVGHKVALQGNMDPSVLYAQPERIELEVKQILAGFGQGSGHVFNLGHGIHQDVPEQSPKVFVD 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ACTP2 (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=hemE PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.058e-51
Identity = 105/250 (42.00%), Postives = 155/250 (62.00%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP--DLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ ++ PK+LHALL K   S+  Y+  Q   GAQAV +FD+W   L+  +++EFSL Y+ +IVD + + +    + + L+  G G  LE +A TG D V LDWTVD+A+ RRR+G  VA+QGN+DP  L+   + I   +   +   G+   H+ NLGHGI    PE++   F +
Sbjct:   94 GEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYADPKILHALLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHNEYKEFSLRYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIADARRRVGHKVALQGNMDPSVLYAQPERIELEVKQILAGFGQGSGHVFNLGHGIHQDVPEQSPKVFVD 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBVY (Uroporphyrinogen decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=hemE PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 100/251 (39.84%), Postives = 158/251 (62.95%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR--WKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP+  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+  FSL Y+ +IVD + + +    + + L+    G  LE++A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+ S D I   +   +   G     H+ NLGHGI +  P EN   F E
Sbjct:   94 GEGPIFDNPITCKADVEKIGVPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPQTLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNLFSLQYMHKIVDGLIRENDGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSMLYASHDRIREEVASILEGFGHGGTGHVFNLGHGIHLDVPPENAGVFVE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VIBVU (Uroporphyrinogen decarboxylase OS=Vibrio vulnificus GN=hemE PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 100/251 (39.84%), Postives = 158/251 (62.95%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR--WKHILNLGHGIKVGTPEENVAHFFE 747
            G+GP+  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+  FSL Y+ +IVD + + +    + + L+    G  LE++A TG D V LDWT+++A+ + R+G  VA+QGN+DP  L+ S D I   +   +   G     H+ NLGHGI +  P EN   F E
Sbjct:   94 GEGPIFDNPITCKADVEKIGVPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPQTLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNLFSLQYMHKIVDGLIRENDGRRVPVTLFTKNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSMLYASHDRIREEVASILEGFGHGGTGHVFNLGHGIHLDVPPENAGVFVE 344          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_PSEA6 (Uroporphyrinogen decarboxylase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemE PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.627e-51
Identity = 101/251 (40.24%), Postives = 154/251 (61.35%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD--TVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            +G+GP    PI + A++  +   DPE+ + YV  A+  +R+ +  E  ++GF G+P+TLA+Y++EGGSSK F+KIK++AFS P+ LH LL K   S+  Y+  Q D GAQ+V +FD+W   LSP D+++FSL Y+ +IVD  T +     + + L+   +G  LE +A TG D V LDWT+D+   + R+G  VA+QGN+DP  L+ + + I   +   +   G    H+ NLGHGI +  P EN   F +
Sbjct:   93 QGEGPKFSKPITSMADIQNLPAPDPEQELQYVMNAVRTIRKNLQGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMAFSDPQALHLLLDKLADSVILYLNAQIDAGAQSVMVFDTWGGVLSPRDYQDFSLQYMHKIVDGLTRENDGRKVPVTLFTKNAGMWLESIAATGCDGVGLDWTIDIDNAKARVGDKVALQGNMDPSMLYAAPERIEQEVQKILAGFGEGPGHVFNLGHGIHLDVPPENAKVFVD 343          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_CARHZ3.998e-5645.20Uroporphyrinogen decarboxylase OS=Carboxydothermus... [more]
DCUP_MYXXD1.519e-5547.41Uroporphyrinogen decarboxylase OS=Myxococcus xanth... [more]
DCUP_SERP52.053e-5241.34Uroporphyrinogen decarboxylase OS=Serratia proteam... [more]
DCUP_VIBCH1.738e-5141.43Uroporphyrinogen decarboxylase OS=Vibrio cholerae ... [more]
DCUP_VIBC31.738e-5141.43Uroporphyrinogen decarboxylase OS=Vibrio cholerae ... [more]
DCUP_ACTP75.058e-5142.00Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_ACTP25.058e-5142.00Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_VIBVY6.605e-5139.84Uroporphyrinogen decarboxylase OS=Vibrio vulnificu... [more]
DCUP_VIBVU6.605e-5139.84Uroporphyrinogen decarboxylase OS=Vibrio vulnificu... [more]
DCUP_PSEA68.627e-5140.24Uroporphyrinogen decarboxylase OS=Pseudoalteromona... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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