DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_BACC1 (Uroporphyrinogen decarboxylase OS=Bacillus cereus (strain ATCC 10987) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.618e-34
Identity = 82/234 (35.04%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGI 705
            G GPVI +PI +  +V+++ E +PE+ VPY+   + +L  E+  +  ++GF GAPFTLASY++EGG S+++   K   +++PK   AL+ K    +  Y++ Q + GA+AVQIFDSW   ++  D+  F  P +++I   V+     + +I++  G+  L+       +DVV LDW + + E R R G   AVQGN+DP  L      I   +   + +  +   +I NLGHG+
Sbjct:   93 GIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEML-DVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRTM--GVPMIMHGVGAAHLVNEWHDLPLDVVGLDWRLPIEEARAR-GVHKAVQGNMDPSFLLAPWSVIEEHVKGILDQGMKQPGYIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_BACAN (Uroporphyrinogen decarboxylase OS=Bacillus anthracis GN=hemE PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.618e-34
Identity = 82/234 (35.04%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGI 705
            G GPVI +PI +  +V+++ E +PE+ VPY+   + +L  E+  +  ++GF GAPFTLASY++EGG S+++   K   +++PK   AL+ K    +  Y++ Q + GA+AVQIFDSW   ++  D+  F  P +++I   V+     + +I++  G+  L+       +DVV LDW + + E R R G   AVQGN+DP  L      I   +   + +  +   +I NLGHG+
Sbjct:   93 GIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEML-DVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALIDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRTM--GVPMIMHGVGAAHLVNEWHDLPLDVVGLDWRLPIEEARAR-GVHKAVQGNMDPSFLLAPWSVIEEHVKGILDQGMKQPGYIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_BACAH (Uroporphyrinogen decarboxylase OS=Bacillus thuringiensis (strain Al Hakam) GN=hemE PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.618e-34
Identity = 82/234 (35.04%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGI 705
            G GPVI +PI +  +V+++ E +PE+ VPY+   + +L  E+  +  ++GF GAPFTLASY++EGG S+++   K   +++PK   AL+ K    +  Y++ Q + GA+AVQIFDSW   ++  D+  F  P +++I   V+     + +I++  G+  L+       +DVV LDW + + E R R G   AVQGN+DP  L      I   +   + +  +   +I NLGHG+
Sbjct:   93 GIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEML-DVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRTM--GVPMIMHGVGAAHLVNEWHDLPLDVVGLDWRLPIEEARAR-GVHKAVQGNMDPSFLLAPWSVIEEHVKGILDQGMKQPGYIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_BACC2 (Uroporphyrinogen decarboxylase OS=Bacillus cereus (strain G9842) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.337e-34
Identity = 82/234 (35.04%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGI 705
            G GPVI +PI +  +V+++ E +PE+ VPY+   + +L  E+  +  ++GF GAPFTLASY++EGG S+++   K   +++PK   AL+ K    +  Y++ Q + GA+AVQIFDSW   ++  D+  F  P +++I   V+     + +I++  G+  L+       +DVV LDW + + E R R G   AVQGN+DP  L      I   +   + +  +   +I NLGHG+
Sbjct:   93 GIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEML-DVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRPM--GVPMIMHGVGAAHLVNEWHDLPLDVVGLDWRLPIEEARAR-GVHKAVQGNMDPSFLLAPWSVIEEHVKGILDQGMKEPGYIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_VARPS (Uroporphyrinogen decarboxylase OS=Variovorax paradoxus (strain S110) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.582e-34
Identity = 87/268 (32.46%), Postives = 140/268 (52.24%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD---LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDV-----AVQGNVDPGALFGSKDFITNRINDTVRKAGR---------WKHILNLGHGIKVGTPEENVAHFFEVAKA 759
            G+GP    P+  +A V  + E      + YV  A+  +R+ ++    ++GF G+P+TLA Y+VEG  S  +  +K + +S+P ++H LL     S+A Y+  Q D GAQAV +FDSW   L+   F+EFSL Y  +++  +++   D   +  I++  G G  LE +     +V+ +DWTV+++  RR +G        A+QGN+DP  LF     I   +   ++  G+           HI NLGHGI   TP ++VA   +   A
Sbjct:   96 GEGPRFARPVQGEAAVAAL-EVPDMAKLRYVFDAVASIRKALDGRVPLIGFSGSPWTLACYMVEGAGSSDYRLVKSMLYSRPDLMHRLLAVNADSVAAYLNAQIDAGAQAVMVFDSWGGVLADGAFQEFSLAYTARVLAGLQRNGADGQPVPRIVFTKGGGLWLEAMRELDCEVLGVDWTVNLSAARRLVGEGTDAKAKALQGNIDPNVLFAPPAQIEAEVAKVLQAFGQPHADAAAKGPTHIFNLGHGISQFTPPDHVAALVQAVHA 362          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_BACC0 (Uroporphyrinogen decarboxylase OS=Bacillus cereus (strain AH820) GN=hemE PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.582e-34
Identity = 82/234 (35.04%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGI 705
            G GPVI +PI +  +V+++ E +PE+ VPY+   + +L  E+  +  ++GF GAPFTLASY++EGG S+++   K   +++PK   AL+ K    +  Y++ Q + GA+AVQIFDSW   ++  D+  F  P +++I   V+     + +I++  G+  L+       +DVV LDW + + E R R G   AVQGN+DP  L      I   +   + +  +   +I NLGHG+
Sbjct:   93 GIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEML-DVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRTM--GVPMIMHGVGAPHLVNEWHDLPLDVVGLDWRLPIEEARAR-GVHKAVQGNMDPSFLLAPWSVIEEHVKGILDQGMKQPGYIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_POLNA (Uroporphyrinogen decarboxylase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemE PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.252e-33
Identity = 83/257 (32.30%), Postives = 137/257 (53.31%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSL--ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPD----VAVQGNVDPGALFGSKDFITNRINDTVRKAGR---------WKHILNLGHGIKVGTPEENV 732
            G+GP    P+  +A V+++ E      + YV  A+T +R+ +     ++GF G+P+TLA Y+VEG  S  +  +K + + +P ++H +L     ++A Y+  Q + GAQAV IFDSW   L+   F  FSL Y  +++  +K+ H  +++  +++  G G  LE +     +V+ LDWTV++A+ R  +G +     A+QGN+DP  LF +   I   +   +   G             I NLGHGI   TP E+V
Sbjct:   95 GEGPRFATPVRDEAAVNKL-EVPDMNKLRYVFDAVTSIRKALGGRVPLIGFSGSPWTLACYMVEGSGSDDYRLVKTMLYQRPDLMHKMLAINADAVALYLNAQIEAGAQAVMIFDSWGGVLADAAFHTFSLAYTARVLSQLKREHKGVTIPRLVFTKGGGQWLESMKQLDCEVLGLDWTVNLAKARALVGENGPNAKALQGNLDPNVLFANPAQIEAEVAAVLNSFGAPHTDLTQTGPTQIFNLGHGISQHTPPESV 350          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_GLUOX (Uroporphyrinogen decarboxylase OS=Gluconobacter oxydans GN=hemE PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.135e-33
Identity = 87/259 (33.59%), Postives = 148/259 (57.14%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLA-LTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAKAI 762
            I G+GPV+   I ++A++ ++     +++V  V + L+ L +E+ +   +LGF G+PFT++ Y+VEGG S+ F++ +R+  + P +   L+   T+S A+ +  Q + GA+AV +FDSWA  L P  F  + +   +QIV+ ++  HP   +I +    G ++   A  TGV+ ++LD   D   ++E    + P + +QGN+DP  LF   + +  R    +R A R K H+ NLGHG+   TP ENVA   E  +A+
Sbjct:   97 IDGRGPVL-GAIRSEADLARLDPKRVQDAVAPVRETLSRLTKELPDVTTLLGFAGSPFTVSCYMVEGGGSRDFAETRRMMQTNPALFDRLIDTLTSSTAEMLCGQIEAGAEAVMLFDSWAGILPPSAFRRYVIEPTRQIVEYIRARHPKTPIIGFPRLGGIMVREYAQKTGVNTLALDTVADPAQISELVSEVRPGLTLQGNMDPMILFSGGETMI-REAQAIRDAMRGKPHVFNLGHGVMQHTPPENVAALVEAVRAV 353          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_BACWK (Uroporphyrinogen decarboxylase OS=Bacillus weihenstephanensis (strain KBAB4) GN=hemE PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 81/234 (34.62%), Postives = 132/234 (56.41%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGI 705
            G GPVI  PI +  +V+++ E +PE+ VPY+   + +L  E+  +  ++GF GAPFTLASY++EGG S+++   K   +++PK   AL+ K    +  Y++ Q + G +AVQIFDSW   ++  D+  F  P +++I   V+     + +I++  G+  L+       +DVV LDW + + E R R G   AVQGN+DP  L      I   +   + +  +   +I NLGHG+
Sbjct:   93 GIGPVIDSPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEML-DVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGVKAVQIFDSWVGAVNVADYRIFIKPAMERIFAEVRPM--GVPMIMHGVGAAHLVNEWHDLPLDVVGLDWRLPIEEARAR-GVHRAVQGNMDPSFLLAPWPVIEEHVKGILDQGMKQPGYIFNLGHGV 322          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCTU (Uroporphyrinogen decarboxylase OS=Mycobacterium tuberculosis GN=hemE PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.059e-32
Identity = 82/245 (33.47%), Postives = 133/245 (54.29%), Query Frame = 1
Query:   13 GPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL--ALTGVD------VVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFG---SKDFITNRINDTVRK---AGRWKHILNLGHGI 705
            GPVI DP+ T A+V  ++  DP+   P +  A  ++ E    +  ++GF GAPFTLASY+VEGG S+H + +K +  ++P   HAL+ K T     ++  Q D G  A+Q+FDSWA  LSP+D+ ++ LP+  ++   + +    + +  +  G+  LL  +  A+T  +      VV +DW   + +   R+ P  A+QGN+DP  +     + +     + D  R+   AG   HI NLGHG+
Sbjct:   98 GPVIADPVRTAADVAAMKPLDPQAIQPVLVAASLLVAEL--GDVPLIGFAGAPFTLASYLVEGGPSRHHAHVKAMMLAEPASWHALMAKLTDLTIAFLVGQIDAGVDAIQVFDSWAGALSPIDYRQYVLPHSARVFAALGE--HGVPMTHFGVGTAELLGAMSEAVTAGERPGRGAVVGVDWRTPLTDAAARVVPGTALQGNLDPAVVLAGWPAVERAARAVVDDGRRAVDAGAAGHIFNLGHGV 338          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_BACC15.618e-3435.04Uroporphyrinogen decarboxylase OS=Bacillus cereus ... [more]
DCUP_BACAN5.618e-3435.04Uroporphyrinogen decarboxylase OS=Bacillus anthrac... [more]
DCUP_BACAH5.618e-3435.04Uroporphyrinogen decarboxylase OS=Bacillus thuring... [more]
DCUP_BACC27.337e-3435.04Uroporphyrinogen decarboxylase OS=Bacillus cereus ... [more]
DCUP_VARPS9.582e-3432.46Uroporphyrinogen decarboxylase OS=Variovorax parad... [more]
DCUP_BACC09.582e-3435.04Uroporphyrinogen decarboxylase OS=Bacillus cereus ... [more]
DCUP_POLNA1.252e-3332.30Uroporphyrinogen decarboxylase OS=Polaromonas naph... [more]
DCUP_GLUOX2.135e-3333.59Uroporphyrinogen decarboxylase OS=Gluconobacter ox... [more]
DCUP_BACWK4.756e-3334.62Uroporphyrinogen decarboxylase OS=Bacillus weihens... [more]
DCUP_MYCTU1.059e-3233.47Uroporphyrinogen decarboxylase OS=Mycobacterium tu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
back to top