DC900215
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SINMW (Uroporphyrinogen decarboxylase OS=Sinorhizobium medicae (strain WSM419) GN=hemE PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 4.921e-30 Identity = 83/255 (32.55%), Postives = 136/255 (53.33%), Query Frame = 1 Query: 4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL-ALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 765 +G+GP + DPI+ D + Q+ + E + V + ++ LR E+ E +LGF GAP+T+A+Y++ G + + + A+ PK LL A Y+ Q D GA AVQIFDSWA L +F+ +++ +++I+ +V+ P +I +A G+G LL+ TG D + LDW+V ++ L D VQGN+DP + + + I+ + G+ I NLGHGI TP+ + H + +R Sbjct: 92 EGQGPRM-DPIDEDG-IAQLSQTGVIEHLAPVFETVSRLRGELAAEITLLGFCGAPWTVATYMIAGRGTPDQAPARLFAYRHPKAFERLLALLADISADYLVEQIDRGADAVQIFDSWAGVLGEEEFQRYAVEPVRRIIASVRSRRPSAKIIAFAKGAGILLKNYRQATGADAIGLDWSVPLSFA-AELQKDGPVQGNLDPVRVVAGGAALEHGIDRILDVLGQGPLIFNLGHGI---TPDADPEHVAALVSRVR 340
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ERYLH (Uroporphyrinogen decarboxylase OS=Erythrobacter litoralis (strain HTCC2594) GN=hemE PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.432e-29 Identity = 80/253 (31.62%), Postives = 130/253 (51.38%), Query Frame = 1 Query: 1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL-TGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 756 + G+GP + P DAE++ + E + + + + +R ++ E +LGF G+P+T+A+Y+V G S+ + +A++ P L A++ +Y+ Q D GA+AVQ+FDSWA L+P FE + + IV +K+ PD +I + G+G L A TGVD ++LD T+D A L + VQGN+DP + D + R + H+ NLGHGI TP +V + + Sbjct: 88 LAGEGPHL-SPRLADAELEALSTVP--ERLDAIYETVRQVRAALDPETTLLGFAGSPWTVATYMVAGEGSRDQQAARSMAYTDPGKLQAIVDAIIDLTVEYLVGQIDAGAEAVQLFDSWAGSLAPDQFERWVIAPNAAIVRRLKEARPDALVIGFPKGAGAKLSAYAAGTGVDAIALDETIDPAWAHTVLPDGMPVQGNLDPLQILAGGDAMVERTKAILGALADRPHVFNLGHGIDKHTPIGHVERLVDTVR 337
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SPHWW (Uroporphyrinogen decarboxylase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=hemE PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29 Identity = 84/256 (32.81%), Postives = 130/256 (50.78%), Query Frame = 1 Query: 7 GKGPVIFDPI--NTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL-TGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 765 G+GP + + T A+++ V P P G + R + E LGF G+P+T+A+Y+V G S+ ++ +R A+ P A++ + A Y+ Q + G AVQ+FDSWA L+P +FE + + Q+V + HP + +I + G+GG L A TGVD V LD TVD A L + VQGN+DP AL + + ++ + H+ NLGHGI + TP +AH + +R Sbjct: 96 GEGPRLSPTLVDRTLADLEPV----PARLEPIYGTVRRV-RAALPAETTFLGFAGSPWTVATYMVAGQGSREQAETRRKAYRDPAGFQAIIDALVDATADYLSKQIEAGVDAVQLFDSWAGSLAPREFERWVIAPTAQLVRRLHARHPGVPVIGFPKGAGGKLPAYARETGVDAVGLDETVDPAWAHANLPEGLTVQGNLDPLALVSGGEGLDTAVDAILGAFPGRPHVFNLGHGILLDTP---IAHVERLLARVR 343
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCPA (Uroporphyrinogen decarboxylase OS=Mycobacterium paratuberculosis GN=hemE PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29 Identity = 79/246 (32.11%), Postives = 121/246 (49.19%), Query Frame = 1 Query: 1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDT-----VKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI---TNRINDTVRK---AGRWKHILNLGHGI 705 + G GPVI P+ T A+V ++ + + P ++ V E ++GF GAPFTLASY++EGG S+H ++ K + + P HAL+ K T +++ Q D G AVQ+FDSWA LS ++ + P+ ++ V TH + A G + L VV +DW +A+ R+ P A+QGN+DP L + + D R+ AG H+ NLGHG+ Sbjct: 98 VAGVGPVIASPVRTAADVAAMKPLERQRVQPIADAVRLLVSALV--EVPLIGFAGAPFTLASYLIEGGPSRHHARTKAMMLADPDSWHALMEKLTDITVGFLRVQLDAGVDAVQVFDSWAGALSLANYRSYVQPHSARVFAALADYGVPMTHFGVGT---AELLGAMSAALKPAPATVVGVDWRTALADAATRVMPGTALQGNLDPVVLLAGWPVVETAARAVVDDGRRAVDAGAAGHVFNLGHGV 338
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCA1 (Uroporphyrinogen decarboxylase OS=Mycobacterium avium (strain 104) GN=hemE PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29 Identity = 79/246 (32.11%), Postives = 124/246 (50.41%), Query Frame = 1 Query: 1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDT-----VKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI---TNRINDTVRK---AGRWKHILNLGHGI 705 + G GPVI P+ T A+V ++ + + P + A+ +L + E ++GF GAPFTLASY++EGG S+H ++ K + + P+ H L+ K T +++ Q D G AVQ+FDSWA LS ++ + P+ ++ V TH + A G + L VV +DW +A+ R+ P A+QGN+DP L + + D R+ AG H+ NLGHG+ Sbjct: 98 VAGVGPVIASPVRTAADVAAMKPLERQRVQP-IADAVRLLVSALG-EVPLIGFAGAPFTLASYLIEGGPSRHHARTKAMMLADPESWHTLMEKLTDITVGFLRVQLDAGVDAVQVFDSWAGALSLANYRSYVQPHSARVFAALADYGVPMTHFGVGT---AELLGAMSAALKPAPATVVGVDWRTALADAATRVMPGTALQGNLDPVVLLAGWPVVETAARAVVDDGRRAVDAGAAGHVFNLGHGV 338
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCLE (Uroporphyrinogen decarboxylase OS=Mycobacterium leprae GN=hemE PE=3 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29 Identity = 77/245 (31.43%), Postives = 130/245 (53.06%), Query Frame = 1 Query: 13 GPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--------GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFG---SKDFITNRINDTVRK---AGRWKHILNLGHGI 705 GPVI DP+ T ++ ++ +P+ P + +A+++L + + ++GF GAPFTLASY+VEGG S++ + K + ++P H L+ K T ++ Q D G A+Q+FDSWA LS D+ ++ LP+ +I TV + + + + G+ LL ++ VV +DW + + R+ P A+QGN+DP L + + + + D R+ AG H+ NLGHG+ Sbjct: 98 GPVIGDPVRTATDIHAMKPLEPQAIQP-IFQAISLLVAALG-DVPLIGFAGAPFTLASYLVEGGPSRNHPRTKAMMLAEPASWHTLMDKLTDLTLGFLLGQIDAGVDAIQVFDSWAGTLSLSDYRQYVLPHSARIFATVAE--HGVPMTHFGVGTADLLGAMSAAVRSGEKPGHQAVVGVDWRTSLTDAAARVEPCTALQGNLDPVVLLAGWPAVERVARTVVDDGRRAVVAGAAGHVFNLGHGV 338
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCLB (Uroporphyrinogen decarboxylase OS=Mycobacterium leprae (strain Br4923) GN=hemE PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29 Identity = 77/245 (31.43%), Postives = 130/245 (53.06%), Query Frame = 1 Query: 13 GPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--------GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFG---SKDFITNRINDTVRK---AGRWKHILNLGHGI 705 GPVI DP+ T ++ ++ +P+ P + +A+++L + + ++GF GAPFTLASY+VEGG S++ + K + ++P H L+ K T ++ Q D G A+Q+FDSWA LS D+ ++ LP+ +I TV + + + + G+ LL ++ VV +DW + + R+ P A+QGN+DP L + + + + D R+ AG H+ NLGHG+ Sbjct: 98 GPVIGDPVRTATDIHAMKPLEPQAIQP-IFQAISLLVAALG-DVPLIGFAGAPFTLASYLVEGGPSRNHPRTKAMMLAEPASWHTLMDKLTDLTLGFLLGQIDAGVDAIQVFDSWAGTLSLSDYRQYVLPHSARIFATVAE--HGVPMTHFGVGTADLLGAMSAAVRSGEKPGHQAVVGVDWRTSLTDAAARVEPCTALQGNLDPVVLLAGWPAVERVARTVVDDGRRAVVAGAAGHVFNLGHGV 338
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHISN (Uroporphyrinogen decarboxylase OS=Rhizobium sp. (strain NGR234) GN=hemE PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 7.107e-29 Identity = 84/245 (34.29%), Postives = 125/245 (51.02%), Query Frame = 1 Query: 4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 735 +G GP + DPI+TD + P V + + LR E+ E +LGF GAP+T+A+Y++ G + + + A+ PK LL A Y+ Q D GA AVQIFDSWA L +F F++ +++++ +V+ P +I +A G+G LL + LTG D + LDW V +A L D VQGN+DP + + + I+ + G I NLGHGI ENV+ Sbjct: 92 EGHGPRM-DPIDTDGIAGLKADGILSHLSP-VFETVARLRRELPEETTLLGFCGAPWTVATYMIAGRGTPDQAPARLFAYRHPKAFEELLAFLADVSADYLVAQIDAGADAVQIFDSWAGVLGEDEFARFAVEPVRRMIASVRARRPSAKIIAFAKGAGLLLKDYRRLTGADAIGLDWAVPLAFA-AELQKDGPVQGNLDPMRVVAGGGAMESGIDRILDVLGNGPLIFNLGHGITPEADPENVS 333
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_OCHA4 (Uroporphyrinogen decarboxylase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hemE PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 7.107e-29 Identity = 80/249 (32.13%), Postives = 132/249 (53.01%), Query Frame = 1 Query: 4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL-ALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFE 747 +GKGP++ PI+ D E+ + + + V + + +LRE++ +E +LGF GAP+T+A+Y++ G + + + A+ P+ LL A+Y+ Q D GA AVQIFDSW+ L FE F + + +IV V+ +P+ +I + G+G L TGVD + LDW+V + L + A+QGN+DP + + + ++ + + G+ I NLGHGI P ENV + Sbjct: 89 EGKGPLM-TPIDAD-EIFWLETEGVAKRLEPVYETVRLLREQLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFAYRFPEAFEKLLNDLADVSAEYLIEQLDAGADAVQIFDSWSGVLDEDCFERFCIRPVARIVQKVRAVYPEARIIGFPKGAGMLYAGYREKTGVDALGLDWSVPFSFA-AALQEEGAIQGNLDPLRVVAGGNALDEGVDTILERLGQGPLIFNLGHGITPQAPIENVQRMID 334
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ARTS2 (Uroporphyrinogen decarboxylase OS=Arthrobacter sp. (strain FB24) GN=hemE PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 9.281e-29 Identity = 80/256 (31.25%), Postives = 135/256 (52.73%), Query Frame = 1 Query: 1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK--HILNLGHGIKVGTPEENVAHFFEVAKAI 762 + G GPV+ P+ T +V + + E P + +A+ + ++ + ++GF GAPFTLA+Y+VEG S+ + + + P+ +AL + +++ Q + GA A Q+FDSWA L D++ F P + +D V+ H LI + +G+ LL + GVDVV +D+ + + E RRLG V +QGN+DP L + + + + KAG + H+LNLGHG+ T + + E+ +I Sbjct: 92 VPGVGPVLDKPVRTAEDVAALPQLTWEALEP-IREAVRLTVAQLG-KTPLIGFAGAPFTLAAYMVEGKPSRDHLGPRTMMHADPETWNALANWAADASGMFLRAQLEAGASAGQLFDSWAGSLGLADYKRFVAPASARALDHVR--HLGAPLIHFGTGTSELLVAMRDVGVDVVGVDYRLPLDEANRRLGGTVPLQGNIDPALLSAPWAVLEAHVREVI-KAGSFAPGHVLNLGHGVPPETDPDVLTRVVELIHSI 342 The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bpback to top |