DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5343 contig Csv1_Contig5343:486..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SINMW (Uroporphyrinogen decarboxylase OS=Sinorhizobium medicae (strain WSM419) GN=hemE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.921e-30
Identity = 83/255 (32.55%), Postives = 136/255 (53.33%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL-ALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 765
            +G+GP + DPI+ D  + Q+ +    E +  V + ++ LR E+  E  +LGF GAP+T+A+Y++ G  +   +  +  A+  PK    LL       A Y+  Q D GA AVQIFDSWA  L   +F+ +++  +++I+ +V+   P   +I +A G+G LL+     TG D + LDW+V ++     L  D  VQGN+DP  +      + + I+  +   G+   I NLGHGI   TP+ +  H   +   +R
Sbjct:   92 EGQGPRM-DPIDEDG-IAQLSQTGVIEHLAPVFETVSRLRGELAAEITLLGFCGAPWTVATYMIAGRGTPDQAPARLFAYRHPKAFERLLALLADISADYLVEQIDRGADAVQIFDSWAGVLGEEEFQRYAVEPVRRIIASVRSRRPSAKIIAFAKGAGILLKNYRQATGADAIGLDWSVPLSFA-AELQKDGPVQGNLDPVRVVAGGAALEHGIDRILDVLGQGPLIFNLGHGI---TPDADPEHVAALVSRVR 340          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ERYLH (Uroporphyrinogen decarboxylase OS=Erythrobacter litoralis (strain HTCC2594) GN=hemE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.432e-29
Identity = 80/253 (31.62%), Postives = 130/253 (51.38%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL-TGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 756
            + G+GP +  P   DAE++ +      E +  + + +  +R  ++ E  +LGF G+P+T+A+Y+V G  S+     + +A++ P  L A++        +Y+  Q D GA+AVQ+FDSWA  L+P  FE + +     IV  +K+  PD  +I +  G+G  L   A  TGVD ++LD T+D A     L   + VQGN+DP  +    D +  R    +       H+ NLGHGI   TP  +V    +  +
Sbjct:   88 LAGEGPHL-SPRLADAELEALSTVP--ERLDAIYETVRQVRAALDPETTLLGFAGSPWTVATYMVAGEGSRDQQAARSMAYTDPGKLQAIVDAIIDLTVEYLVGQIDAGAEAVQLFDSWAGSLAPDQFERWVIAPNAAIVRRLKEARPDALVIGFPKGAGAKLSAYAAGTGVDAIALDETIDPAWAHTVLPDGMPVQGNLDPLQILAGGDAMVERTKAILGALADRPHVFNLGHGIDKHTPIGHVERLVDTVR 337          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SPHWW (Uroporphyrinogen decarboxylase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 84/256 (32.81%), Postives = 130/256 (50.78%), Query Frame = 1
Query:    7 GKGPVIFDPI--NTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL-TGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 765
            G+GP +   +   T A+++ V    P    P  G    + R  +  E   LGF G+P+T+A+Y+V G  S+  ++ +R A+  P    A++     + A Y+  Q + G  AVQ+FDSWA  L+P +FE + +    Q+V  +   HP + +I +  G+GG L   A  TGVD V LD TVD A     L   + VQGN+DP AL    + +   ++  +       H+ NLGHGI + TP   +AH   +   +R
Sbjct:   96 GEGPRLSPTLVDRTLADLEPV----PARLEPIYGTVRRV-RAALPAETTFLGFAGSPWTVATYMVAGQGSREQAETRRKAYRDPAGFQAIIDALVDATADYLSKQIEAGVDAVQLFDSWAGSLAPREFERWVIAPTAQLVRRLHARHPGVPVIGFPKGAGGKLPAYARETGVDAVGLDETVDPAWAHANLPEGLTVQGNLDPLALVSGGEGLDTAVDAILGAFPGRPHVFNLGHGILLDTP---IAHVERLLARVR 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCPA (Uroporphyrinogen decarboxylase OS=Mycobacterium paratuberculosis GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 79/246 (32.11%), Postives = 121/246 (49.19%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDT-----VKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI---TNRINDTVRK---AGRWKHILNLGHGI 705
            + G GPVI  P+ T A+V  ++  + +   P       ++   V  E  ++GF GAPFTLASY++EGG S+H ++ K +  + P   HAL+ K T     +++ Q D G  AVQ+FDSWA  LS  ++  +  P+  ++        V  TH  +     A   G +   L      VV +DW   +A+   R+ P  A+QGN+DP  L      +      + D  R+   AG   H+ NLGHG+
Sbjct:   98 VAGVGPVIASPVRTAADVAAMKPLERQRVQPIADAVRLLVSALV--EVPLIGFAGAPFTLASYLIEGGPSRHHARTKAMMLADPDSWHALMEKLTDITVGFLRVQLDAGVDAVQVFDSWAGALSLANYRSYVQPHSARVFAALADYGVPMTHFGVGT---AELLGAMSAALKPAPATVVGVDWRTALADAATRVMPGTALQGNLDPVVLLAGWPVVETAARAVVDDGRRAVDAGAAGHVFNLGHGV 338          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCA1 (Uroporphyrinogen decarboxylase OS=Mycobacterium avium (strain 104) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 79/246 (32.11%), Postives = 124/246 (50.41%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDT-----VKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI---TNRINDTVRK---AGRWKHILNLGHGI 705
            + G GPVI  P+ T A+V  ++  + +   P +  A+ +L   +  E  ++GF GAPFTLASY++EGG S+H ++ K +  + P+  H L+ K T     +++ Q D G  AVQ+FDSWA  LS  ++  +  P+  ++        V  TH  +     A   G +   L      VV +DW   +A+   R+ P  A+QGN+DP  L      +      + D  R+   AG   H+ NLGHG+
Sbjct:   98 VAGVGPVIASPVRTAADVAAMKPLERQRVQP-IADAVRLLVSALG-EVPLIGFAGAPFTLASYLIEGGPSRHHARTKAMMLADPESWHTLMEKLTDITVGFLRVQLDAGVDAVQVFDSWAGALSLANYRSYVQPHSARVFAALADYGVPMTHFGVGT---AELLGAMSAALKPAPATVVGVDWRTALADAATRVMPGTALQGNLDPVVLLAGWPVVETAARAVVDDGRRAVDAGAAGHVFNLGHGV 338          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCLE (Uroporphyrinogen decarboxylase OS=Mycobacterium leprae GN=hemE PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 77/245 (31.43%), Postives = 130/245 (53.06%), Query Frame = 1
Query:   13 GPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--------GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFG---SKDFITNRINDTVRK---AGRWKHILNLGHGI 705
            GPVI DP+ T  ++  ++  +P+   P + +A+++L   +  +  ++GF GAPFTLASY+VEGG S++  + K +  ++P   H L+ K T     ++  Q D G  A+Q+FDSWA  LS  D+ ++ LP+  +I  TV +    + +  +  G+  LL  ++             VV +DW   + +   R+ P  A+QGN+DP  L     + + +   + D  R+   AG   H+ NLGHG+
Sbjct:   98 GPVIGDPVRTATDIHAMKPLEPQAIQP-IFQAISLLVAALG-DVPLIGFAGAPFTLASYLVEGGPSRNHPRTKAMMLAEPASWHTLMDKLTDLTLGFLLGQIDAGVDAIQVFDSWAGTLSLSDYRQYVLPHSARIFATVAE--HGVPMTHFGVGTADLLGAMSAAVRSGEKPGHQAVVGVDWRTSLTDAAARVEPCTALQGNLDPVVLLAGWPAVERVARTVVDDGRRAVVAGAAGHVFNLGHGV 338          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_MYCLB (Uroporphyrinogen decarboxylase OS=Mycobacterium leprae (strain Br4923) GN=hemE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 77/245 (31.43%), Postives = 130/245 (53.06%), Query Frame = 1
Query:   13 GPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--------GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFG---SKDFITNRINDTVRK---AGRWKHILNLGHGI 705
            GPVI DP+ T  ++  ++  +P+   P + +A+++L   +  +  ++GF GAPFTLASY+VEGG S++  + K +  ++P   H L+ K T     ++  Q D G  A+Q+FDSWA  LS  D+ ++ LP+  +I  TV +    + +  +  G+  LL  ++             VV +DW   + +   R+ P  A+QGN+DP  L     + + +   + D  R+   AG   H+ NLGHG+
Sbjct:   98 GPVIGDPVRTATDIHAMKPLEPQAIQP-IFQAISLLVAALG-DVPLIGFAGAPFTLASYLVEGGPSRNHPRTKAMMLAEPASWHTLMDKLTDLTLGFLLGQIDAGVDAIQVFDSWAGTLSLSDYRQYVLPHSARIFATVAE--HGVPMTHFGVGTADLLGAMSAAVRSGEKPGHQAVVGVDWRTSLTDAAARVEPCTALQGNLDPVVLLAGWPAVERVARTVVDDGRRAVVAGAAGHVFNLGHGV 338          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_RHISN (Uroporphyrinogen decarboxylase OS=Rhizobium sp. (strain NGR234) GN=hemE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.107e-29
Identity = 84/245 (34.29%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 735
            +G GP + DPI+TD       +       P V + +  LR E+  E  +LGF GAP+T+A+Y++ G  +   +  +  A+  PK    LL       A Y+  Q D GA AVQIFDSWA  L   +F  F++  +++++ +V+   P   +I +A G+G LL +   LTG D + LDW V +A     L  D  VQGN+DP  +      + + I+  +   G    I NLGHGI      ENV+
Sbjct:   92 EGHGPRM-DPIDTDGIAGLKADGILSHLSP-VFETVARLRRELPEETTLLGFCGAPWTVATYMIAGRGTPDQAPARLFAYRHPKAFEELLAFLADVSADYLVAQIDAGADAVQIFDSWAGVLGEDEFARFAVEPVRRMIASVRARRPSAKIIAFAKGAGLLLKDYRRLTGADAIGLDWAVPLAFA-AELQKDGPVQGNLDPMRVVAGGGAMESGIDRILDVLGNGPLIFNLGHGITPEADPENVS 333          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_OCHA4 (Uroporphyrinogen decarboxylase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hemE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.107e-29
Identity = 80/249 (32.13%), Postives = 132/249 (53.01%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL-ALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFE 747
            +GKGP++  PI+ D E+  +      + +  V + + +LRE++ +E  +LGF GAP+T+A+Y++ G  +   +  +  A+  P+    LL       A+Y+  Q D GA AVQIFDSW+  L    FE F +  + +IV  V+  +P+  +I +  G+G L       TGVD + LDW+V  +     L  + A+QGN+DP  +    + +   ++  + + G+   I NLGHGI    P ENV    +
Sbjct:   89 EGKGPLM-TPIDAD-EIFWLETEGVAKRLEPVYETVRLLREQLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFAYRFPEAFEKLLNDLADVSAEYLIEQLDAGADAVQIFDSWSGVLDEDCFERFCIRPVARIVQKVRAVYPEARIIGFPKGAGMLYAGYREKTGVDALGLDWSVPFSFA-AALQEEGAIQGNLDPLRVVAGGNALDEGVDTILERLGQGPLIFNLGHGITPQAPIENVQRMID 334          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ARTS2 (Uroporphyrinogen decarboxylase OS=Arthrobacter sp. (strain FB24) GN=hemE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.281e-29
Identity = 80/256 (31.25%), Postives = 135/256 (52.73%), Query Frame = 1
Query:    1 IKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK--HILNLGHGIKVGTPEENVAHFFEVAKAI 762
            + G GPV+  P+ T  +V  + +   E   P + +A+ +   ++  +  ++GF GAPFTLA+Y+VEG  S+     + +  + P+  +AL      +   +++ Q + GA A Q+FDSWA  L   D++ F  P   + +D V+  H    LI + +G+  LL  +   GVDVV +D+ + + E  RRLG  V +QGN+DP  L      +   + + + KAG +   H+LNLGHG+   T  + +    E+  +I
Sbjct:   92 VPGVGPVLDKPVRTAEDVAALPQLTWEALEP-IREAVRLTVAQLG-KTPLIGFAGAPFTLAAYMVEGKPSRDHLGPRTMMHADPETWNALANWAADASGMFLRAQLEAGASAGQLFDSWAGSLGLADYKRFVAPASARALDHVR--HLGAPLIHFGTGTSELLVAMRDVGVDVVGVDYRLPLDEANRRLGGTVPLQGNIDPALLSAPWAVLEAHVREVI-KAGSFAPGHVLNLGHGVPPETDPDVLTRVVELIHSI 342          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_SINMW4.921e-3032.55Uroporphyrinogen decarboxylase OS=Sinorhizobium me... [more]
DCUP_ERYLH1.432e-2931.62Uroporphyrinogen decarboxylase OS=Erythrobacter li... [more]
DCUP_SPHWW2.442e-2932.81Uroporphyrinogen decarboxylase OS=Sphingomonas wit... [more]
DCUP_MYCPA2.442e-2932.11Uroporphyrinogen decarboxylase OS=Mycobacterium pa... [more]
DCUP_MYCA12.442e-2932.11Uroporphyrinogen decarboxylase OS=Mycobacterium av... [more]
DCUP_MYCLE5.441e-2931.43Uroporphyrinogen decarboxylase OS=Mycobacterium le... [more]
DCUP_MYCLB5.441e-2931.43Uroporphyrinogen decarboxylase OS=Mycobacterium le... [more]
DCUP_RHISN7.107e-2934.29Uroporphyrinogen decarboxylase OS=Rhizobium sp. (s... [more]
DCUP_OCHA47.107e-2932.13Uroporphyrinogen decarboxylase OS=Ochrobactrum ant... [more]
DCUP_ARTS29.281e-2931.25Uroporphyrinogen decarboxylase OS=Arthrobacter sp.... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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