DC900215

Overview
NameDC900215
Unique NameDC900215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECOBW (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain K12 / BW2952) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO8A (Uroporphyrinogen decarboxylase OS=Escherichia coli O8 (strain IAI1) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO55 (Uroporphyrinogen decarboxylase OS=Escherichia coli (strain 55989 / EAEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLVRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_ECO24 (Uroporphyrinogen decarboxylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SODGM (Uroporphyrinogen decarboxylase OS=Sodalis glossinidius (strain morsitans) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 100/249 (40.16%), Postives = 152/249 (61.04%), Query Frame = 1
Query:    4 KGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTV--KQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHF 741
            +G+GP    PI    +V+Q+   DPE+ + YV  A+  +R+ +     ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+  Y+  Q   GAQAV +FD+W   L+  D+ EFS+ Y+ +IVD +  +Q    + + L+  G G  LE +A TG D + LDW+ D+A+ RRR+G  VA+QGN+DP  L+GS   I   +   +   G  + H+ NLGHGI    P  +  HF
Sbjct:   93 QGEGPRFARPIQHRRDVEQLPIPDPEQELGYVMNAVRAIRQRLQGAVPLIGFSGSPWTLATYMVEGGSSKAFTKIKQMLYAEPETLHLLLDKLADSVVLYLNGQIRAGAQAVMLFDTWGGALTGADYREFSMHYMHKIVDGLLREQDGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWSTDIADARRRVGDKVALQGNMDPSVLYGSPARIEREVATILDAFGPGEGHVFNLGHGIHQDVPPAHAGHF 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_PELCD (Uroporphyrinogen decarboxylase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemE PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 98/241 (40.66%), Postives = 146/241 (60.58%), Query Frame = 1
Query:   16 PVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTV-RKAGRWKHILNLGHGIKVGTPEENVA 735
            PV+  P+ T A+V+ +R   PE+ VP+V + + +LR E++    ++GF GAPFTLA Y+VEG  S+HF  +KRL +  P+    L+ K T +   Y++ QA+ GAQA+Q+FDSW   LSP D++ + LPY ++++  +      + LI +  G+G +L+ +A+ G  VV LDW   +   R  LG  +AVQGN+DP  L G++D I   +   +   AGR  HI NLGHGI    P EN A
Sbjct:   93 PVLEPPVRTAADVEALRVLQPEQDVPFVLETIRLLRRELDGRVPLIGFGGAPFTLACYMVEGAGSRHFLALKRLMYQAPETYARLMDKITDTSIVYLRAQAEAGAQALQVFDSWGGILSPADYQRYVLPYSRRLLSALGDF--GIPLIHFVKGAGAMLDLVAMAGGQVVGLDWCTSLNRARDILGNGMAVQGNLDPSVLLGAQDIIEREVRRILDENAGRPGHIFNLGHGILPEVPPENAA 331          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHIDS (Uroporphyrinogen decarboxylase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hemE PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.075e-49
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 747
            G+GP    P+   A+VD++   DPE+ + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K   S+  Y+  Q   GAQAV IFD+W   L+  D+++FSL Y+ +IVD + + +    + + L+  G G  LE +A TG D + LDWT D+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G  + H+ NLGHGI    P E+   F E
Sbjct:   94 GEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPLEHAGVFVE 343          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHEON (Uroporphyrinogen decarboxylase OS=Shewanella oneidensis GN=hemE PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.075e-49
Identity = 103/254 (40.55%), Postives = 152/254 (59.84%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ--THPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAKA 759
            G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N +  ++GF G+P+TLA+Y+VEGGSSK F KIK++A+++P  LH LL K   S+  Y+  Q  NGAQ++ IFDSW   LS   + EFSL Y+++IVD + +      + + L+  G G  LE +A TG D + LDWTVD+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G    H+ NLGHGI      E+   F +   A
Sbjct:   94 GEGPRFERPTDTIDAIKKLSIPDPEDELGYVMKAVSTIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEPAALHMLLDKLADSVTLYLNAQVANGAQSLMIFDSWGGALSHTAYREFSLRYMQKIVDGLTRFADGRQVPVTLFTKGGGLWLEAMAETGCDALGLDWTVDIADARRRVGHKVALQGNMDPSMLYAPIPRIEEEVGQILAGYGEGTGHVFNLGHGIHQHVDPEHAGAFIKAVHA 347          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHEWM (Uroporphyrinogen decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hemE PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 103/249 (41.37%), Postives = 152/249 (61.04%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD---LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHF 741
            G+GP    P +T   + ++   DPE+ + YV +A++ +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F KIK++A+ +P  LH LL K   S+  Y+  Q  NGAQ++ IFDSW   LS   + EFSL Y+++IVD + + H D   + + L+  G G  LE +A TG D + LDWTVD+ + RRR+G  VA+QGN+DP  L+ S + I   ++  +   G    H+ NLGHGI      E+   F
Sbjct:   94 GEGPRFQRPTDTIDAIKKLSIPDPEDELGYVMRAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYEEPATLHMLLDKLADSVILYLNAQVANGAQSLMIFDSWGGALSHHAYREFSLRYMQKIVDGLTR-HADGRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGHKVALQGNMDPSVLYASPERIHQEVDQILSSYGEGTGHVFNLGHGIHQHVDPEHAGAF 341          
BLAST of DC900215 vs. ExPASy Swiss-Prot
Match: DCUP_SHESR (Uroporphyrinogen decarboxylase OS=Shewanella sp. (strain MR-7) GN=hemE PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 103/254 (40.55%), Postives = 152/254 (59.84%), Query Frame = 1
Query:    7 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ--THPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAKA 759
            G+GP    P +T   + ++   DPE+ + YV KA++ +R E+N +  ++GF G+P+TLA+Y+VEGGSSK F KIK++A+++P  LH LL K   S+  Y+  Q  NGAQ++ IFDSW   LS   + EFSL Y+++IVD + +      + + L+  G G  LE +A TG D + LDWTVD+A+ RRR+G  VA+QGN+DP  L+     I   +   +   G    H+ NLGHGI      E+   F +   A
Sbjct:   94 GEGPRFERPTDTIDAIKKLAVPDPEDDLGYVMKAVSTIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEPAALHMLLDKLADSVTLYLNAQVANGAQSLMIFDSWGGALSHTAYREFSLRYMQKIVDGLTRFADGRQVPVTLFTKGGGLWLEAMAETGCDALGLDWTVDIADARRRVGHKVALQGNMDPSMLYAPIPRIEEEVAQILAGYGEGTGHVFNLGHGIHQHVDPEHAGAFIKAVHA 347          
The following BLAST results are available for this feature:
BLAST of DC900215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_ECOBW4.734e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECO8A4.734e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECO554.734e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_ECO244.734e-4940.80Uroporphyrinogen decarboxylase OS=Escherichia coli... [more]
DCUP_SODGM6.182e-4940.16Uroporphyrinogen decarboxylase OS=Sodalis glossini... [more]
DCUP_PELCD6.182e-4940.66Uroporphyrinogen decarboxylase OS=Pelobacter carbi... [more]
DCUP_SHIDS8.075e-4940.80Uroporphyrinogen decarboxylase OS=Shigella dysente... [more]
DCUP_SHEON8.075e-4940.55Uroporphyrinogen decarboxylase OS=Shewanella oneid... [more]
DCUP_SHEWM1.055e-4841.37Uroporphyrinogen decarboxylase OS=Shewanella woody... [more]
DCUP_SHESR1.055e-4840.55Uroporphyrinogen decarboxylase OS=Shewanella sp. (... [more]

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Properties
Property NameValue
Genbank descriptionDC900215 VSS Citrus sinensis cDNA clone VS28251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900215 ID=DC900215; Name=DC900215; organism=Citrus sinensis; type=EST; length=840bp
ATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGA
AGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTG
GGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTT
CTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGG
TGGTTCATCGAAGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAAC
CCAAGGTCCTCCATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAG
TATGTACAATACCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGA
TTCATGGGCCACGGAGCTCAGTCCTGTTGATTTTGAAGAGTTTAGTCTGC
CTTACTTGAAGCAAATTGTAGACACTGTGAAACAAACACATCCTGATCTC
TCATTAATCCTTTATGCCAGTGGATCTGGTGGCTTGCTTGAGAGGCTAGC
TTTGACAGGTGTGGATGTTGTTAGCTTGGACTGGACAGTTGACATGGCTG
AAGGTAGACGGCGACTTGGGCCCGACGTTGCAGTTCAAGGAAATGTCGAT
CCTGGTGCACTTTTCGGTTCAAAGGACTTCATCACCAACCGGATAAATGA
TACCGTGAGGAAAGCAGGTAGATGGAAACATATTTTAAATCTTGGTCACG
GCATTAAAGTAGGTACACCTGAGGAAAATGTTGCTCATTTCTTCGAAGTT
GCTAAAGCAATTAGATACTAGAAACATCTGTCAAGTTAATTGTATTTCTA
CTTATTGAGTTTTTCTAATGTATCGCTGCCCTTGATTCTT
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