CX043432

Overview
NameCX043432
Unique NameCX043432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10303 contig Csv1_Contig10303:20..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 74/222 (33.33%), Postives = 114/222 (51.35%), Query Frame = 2
Query:  122 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE 775
            ++V IV   RTPMG    G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M + P        G    H  L   + K  G+        MG  AE+  + H I+RE QD FA+ S ++   A   G F  EI+P+E     G   T+V  DE
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----MNHGVDF-HSGLSKSVAKASGM--------MGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPIEGHDENG-VLTLVTHDE 208          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 74/222 (33.33%), Postives = 114/222 (51.35%), Query Frame = 2
Query:  122 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE 775
            ++V IV   RTPMG    G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M + P        G    H  L   + K  G+        MG  AE+  + H I+RE QD FA+ S ++   A   G F  EI+P+E     G   T+V  DE
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----MNHGVDF-HSGLSKSVAKASGM--------MGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPMEGHDENG-ALTLVTHDE 208          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 69/205 (33.66%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  122 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            +   IV   RTPMG    G   ++ A  L +  ++  L R   +DP+L+++V +G V      G   AR A+L AGIP +    TVN++C S + AI  A+++I  G+ D  + GG+E M + P             + +   GM             MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIE 193          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 69/205 (33.66%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  122 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            +   IV   RTPMG    G   ++ A  L +  ++  L R   +DP+L+++V +G V      G   AR A+L AGIP +    TVN++C S + AI  A+++I  G+ D  + GG+E M + P             + +   GM             MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIE 193          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 69/205 (33.66%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  122 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            +   IV   RTPMG    G   ++ A  L +  ++  L R   +DP+L+++V +G V      G   AR A+L AGIP +    TVN++C S + AI  A+++I  G+ D  + GG+E M + P             + +   GM             MG  AE+  + H ITRE QD FAV S +R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIE 193          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R   VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H ITRE QD F V S +    A   G F  EI+P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 69/225 (30.67%), Postives = 109/225 (48.44%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE 775
            S+ PRDV ++   R+PMG    G   ++ A  L +  I+A   R + VDP+ V+++ +G V  +   G   ARQ +L   IP++    TVN++C S + AI  A+Q+I  G  DV V GG+E M + P         +   + +    M             MG  AE+ A+ H I+R+ QD+F   S      A   G F  EI+ ++     G P+ +++ DE
Sbjct:    2 SLNPRDVVVIDCVRSPMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVPMTQGFDHNPAASKYSAKASNM-------------MGLTAEMLAKMHGISRQQQDEFGARSHRLAHEATLEGRFRNEIISIQGHDDDGFPA-LIENDE 212          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 74/225 (32.89%), Postives = 106/225 (47.11%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLS-ANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDE 775
            S++PRDV IV  ARTPMG    G   ++ A  L +  I   L R A +DP+ + ++ +G V+     G   AR   L AG+P++V   TVN++C S + A+  A+ +I  G+ DV + GG+E M +             LGH                   SMG  AE  +  H ITRE  D+F   S  +   A + G FA EI+        G P T++  DE
Sbjct:    2 SLQPRDVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHMGHIDMN-QHVDPNPALGHSV------------AQAAGSMGLTAEYLSLLHGITREAMDEFGARSHRKAAEATEQGKFAREIIARIGHDETGAP-TLIKHDE 212          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 70/212 (33.02%), Postives = 103/212 (48.58%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            S+ PRDV IV   RTPMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M                GH  ++ G+  +    L+       MG  AE+  + H I+RE QD F   S +    A   G F  EI+P+E
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME 197          
BLAST of CX043432 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 70/212 (33.02%), Postives = 103/212 (48.58%), Query Frame = 2
Query:  110 SIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE 727
            S+ PRDV IV   RTPMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M                GH  ++ G+  +    L+       MG  AE+  + H I+RE QD F   S +    A   G F  EI+P+E
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME 197          
The following BLAST results are available for this feature:
BLAST of CX043432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
FADA_VIBFM4.470e-1933.333-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF14.470e-1933.333-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_SHESW4.470e-1933.663-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEPC4.470e-1933.663-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB84.470e-1933.663-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_PSEPF4.470e-1933.963-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_HAHCH4.470e-1930.673-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_SACD25.838e-1932.893-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_PSEAE5.838e-1933.023-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB5.838e-1933.023-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11A08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A08-A15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043432 ID=CX043432; Name=CX043432; organism=Citrus sinensis; type=EST; length=775bp
CTGCGCTTCCACCCGCAAAAACCATCTCCTCCTCACGTGATCCACACTCA
CTCTGAATCTCGCAGATCGTGATTGGCATTGACAAATGGCTCCAGCGGCA
GCATCTGATTCGATAAAGCCTAGAGATGTTTGTATTGTCGGGGTTGCTCG
TACACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCA
AGCTTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGAT
CCATCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCT
AGGACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATT
CAGTGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCT
ATAATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGT
GGCTGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAG
CGAGAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTT
AAAGATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGC
TGAACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACT
TTGCTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCC
TTTGCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACC
ATCAACCATTGTTGATAAGGATGAA
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