CX043431

Overview
NameCX043431
Unique NameCX043431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_SHIB3 (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 72/239 (30.13%), Postives = 112/239 (46.86%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N++ ++DGAAA++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_ECOLU (3-ketoacyl-CoA thiolase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 72/239 (30.13%), Postives = 111/239 (46.44%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G    E++   +   +     + + +   G    A   KLRP+F    GTVTA N++ ++DGAAA++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+VVE
Sbjct:  199 REQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLAEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVVE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 72/239 (30.13%), Postives = 111/239 (46.44%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G    E++   +   +     + + +   G    A   KLRP+F    GTVTA N++ ++DGAAA++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+VVE
Sbjct:  199 REQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLAEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAIVVE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 71/239 (29.71%), Postives = 112/239 (46.86%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S++   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGATAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSELTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 71/239 (29.71%), Postives = 114/239 (47.70%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N++ ++DGAAA++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVFGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_SALPC (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi C (strain RKS4594) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 71/239 (29.71%), Postives = 114/239 (47.70%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N++ ++DGAAA++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_SALHS (3-ketoacyl-CoA thiolase OS=Salmonella heidelberg (strain SL476) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 71/239 (29.71%), Postives = 114/239 (47.70%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N++ ++DGAAA++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFACEVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 73/239 (30.54%), Postives = 114/239 (47.70%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G  A E++   V   +  P T  +   G      A   KLRP+F    G+VTA N++ ++DGAAA++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYKN-PFTEDNNIRGTSTL--ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_ECOSM (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 72/239 (30.13%), Postives = 111/239 (46.44%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G    E++   +   +     + + +   G    A   KLRP+F    GTVTA N++ ++DGAAA++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+VVE
Sbjct:  199 REQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLAEDNNIRGNSTLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVVE 434          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: FADI_ECOLC (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 72/239 (30.13%), Postives = 111/239 (46.44%), Query Frame = -1
Query:  181 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXGASALVVE 843
            RE QD  A  S +R   A   G    E++   +   +      V+ +   G    A   KLRP+F    GTVTA N++ ++DGAAA++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR+                 +A+V+E
Sbjct:  199 REQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPFVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
The following BLAST results are available for this feature:
BLAST of CX043431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_SHIB39.360e-2130.133-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADI_ECOLU9.360e-2130.133-ketoacyl-CoA thiolase OS=Escherichia coli O17:K5... [more]
FADI_ECOL69.360e-2130.133-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]
FADI_SHIFL1.222e-2029.713-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADI_SALTI1.222e-2029.713-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADI_SALPC1.222e-2029.713-ketoacyl-CoA thiolase OS=Salmonella paratyphi C ... [more]
FADI_SALHS1.222e-2029.713-ketoacyl-CoA thiolase OS=Salmonella heidelberg (... [more]
FADI_SALCH1.222e-2030.543-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADI_ECOSM1.222e-2030.133-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_ECOLC1.222e-2030.133-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11A08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A08-A15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043431 ID=CX043431; Name=CX043431; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTGAGAGCAAAGCCAGAAAATTATTATCTTTTTATTGAAG
ACGAAAGCACATATGAAAAAGAAACGGAGATACAATTGCACAACACCCCA
CCCTAATGGGCCATAATTATACTCCACAAGAAGGGTGCAACCTCGTTGAT
AATAATCCGAACAGAAAAGGCTTACACAAGCTCTACAACAAGTGCCGATG
CACCTCCTCCTCCGTTGCAAACGCCACCAACACCGTATTTCCCGTTTTTC
TGCCTAAGTACCCCCAAAAGTGTGACCAAGATACGAGCTCCGCTGCAGCC
CAGAGGATGTCCCAAAGCTACTGCTCCACCATGGACATTAACCTTGTCAG
GATTTAGTCCAAGCAATTTCTGGTTTGCAAGGGCGACGACAGCAAAGGCC
TCATTTATTTCGTAACAGTCAACTTGAGAAGCCTCCAAGCCAGCATTTGA
AATGGCTTTAGGTATGGCTAGGGCTGGAGCTGTCGTAAACATCTCTGGTG
CCTGAGCAGCATCAGCATATCCTGTGATCTTGGCGATCACTTGCAAACCC
AGCTTAAGTACCTTCTCTCCACTGACTAGAACTAATGCTGCAGCTCCATC
ACTTATACTAGAGGCATTGCCAGCCGTAACAGTTCCTCCATTCTCCTTGA
AACTTGGTCGAAGCTTCCTCAATTTTGCCGGGTCAAACTTGCCTAAACCT
TCATCCTTATCAACAATGGTTGATGGTTTTCCCCTTCCCGCAGAAACTTC
AACTGGAACAATTTCCCATGCAAAGGCACCAGCATCTTGGGCAGCAATAC
CACGCTCAAAGCTCAGAACAGCAAAGTCATCCTGATTCTCCCT
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