CX043431

Overview
NameCX043431
Unique NameCX043431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: VRAB_STAA1 (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=vraB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 58/193 (30.05%), Postives = 89/193 (46.11%), Query Frame = -1
Query:  268 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA-KLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 843
            RE QD+FA  S +        G  + EI+P+ V         I + DE L    P     + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  167 RELQDEFAYRSHQLTAENVKNGNISQEILPITVKG------EIFNTDESLKSHIPKDNFGRFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: VRAB_STAAR (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain MRSA252) GN=vraB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = -1
Query:  268 RENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA-KLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 843
            RE QD+FA  S +        G  + EI+P+ V         + + DE L    P     + +P  K  GGTVTA N+   +DGA  L+++  +   +LG                  +    P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  167 RELQDEFAYRSHQLTAENVKNGNISQEILPITVKG------ELFNTDESLKSHIPKDNFGRFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFDHGLLFKDGVTVGVDSNLPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
BLAST of CX043431 vs. ExPASy Swiss-Prot
Match: VRAB_STAAC (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain COL) GN=vraB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = -1
Query:  268 QDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA-KLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 834
            QD+FA  S +        G  + EI+P+ V         I + DE L    P     + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  170 QDEFAYRSHQLTAENVKNGNISQEILPITVKG------EIFNTDESLKSHIPKDNFGRFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
The following BLAST results are available for this feature:
BLAST of CX043431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
VRAB_STAA17.674e-1530.05Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAR1.309e-1429.53Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAC4.974e-1429.47Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11A08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A08-A15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043431 ID=CX043431; Name=CX043431; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTGAGAGCAAAGCCAGAAAATTATTATCTTTTTATTGAAG
ACGAAAGCACATATGAAAAAGAAACGGAGATACAATTGCACAACACCCCA
CCCTAATGGGCCATAATTATACTCCACAAGAAGGGTGCAACCTCGTTGAT
AATAATCCGAACAGAAAAGGCTTACACAAGCTCTACAACAAGTGCCGATG
CACCTCCTCCTCCGTTGCAAACGCCACCAACACCGTATTTCCCGTTTTTC
TGCCTAAGTACCCCCAAAAGTGTGACCAAGATACGAGCTCCGCTGCAGCC
CAGAGGATGTCCCAAAGCTACTGCTCCACCATGGACATTAACCTTGTCAG
GATTTAGTCCAAGCAATTTCTGGTTTGCAAGGGCGACGACAGCAAAGGCC
TCATTTATTTCGTAACAGTCAACTTGAGAAGCCTCCAAGCCAGCATTTGA
AATGGCTTTAGGTATGGCTAGGGCTGGAGCTGTCGTAAACATCTCTGGTG
CCTGAGCAGCATCAGCATATCCTGTGATCTTGGCGATCACTTGCAAACCC
AGCTTAAGTACCTTCTCTCCACTGACTAGAACTAATGCTGCAGCTCCATC
ACTTATACTAGAGGCATTGCCAGCCGTAACAGTTCCTCCATTCTCCTTGA
AACTTGGTCGAAGCTTCCTCAATTTTGCCGGGTCAAACTTGCCTAAACCT
TCATCCTTATCAACAATGGTTGATGGTTTTCCCCTTCCCGCAGAAACTTC
AACTGGAACAATTTCCCATGCAAAGGCACCAGCATCTTGGGCAGCAATAC
CACGCTCAAAGCTCAGAACAGCAAAGTCATCCTGATTCTCCCT
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