CX043421

Overview
NameCX043421
Unique NameCX043421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:564..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27
Identity = 74/187 (39.57%), Postives = 111/187 (59.36%), Query Frame = -1
Query:  245 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 802
            K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF     TTGA+ D +Q T +A+ MVT +GMSE +GP    +G+ +  ++     + S+SE+ A +ID  V+ L + A   A   I++NRE    I E LL+ ET+   + +A+
Sbjct:  441 KERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFN--VQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQ-YEGNHA--MLGAQSPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKAL 622          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.184e-27
Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = -1
Query:  236 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 802
            +S+ L AYHE GHA+    T G  PV K T+VPRG A G+   +P  D T +S++Q+ AR+   +GGR AEE+IFG  EVT+GA+ D QQ T +A+ MVT +GMS+   +   +    G          SMS +    I+  VK   + AY  A + +  + + +  +   LLE ET++G + + IL++
Sbjct:  481 ESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYNYEDDG---------KSMSTETRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLTGAQIKNILAQ 660          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.298e-27
Identity = 69/193 (35.75%), Postives = 108/193 (55.96%), Query Frame = -1
Query:  239 DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE---IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 808
            D ++    AYHE GH +    T    P+ KVT++PRGQ+ G T  +P  D   ++K Q+ A +   +GGR AEE+IFG  +VTTGAA DL + T LA QMV  FGMS+   +  ++  D   +      ++  + ++ + AE IDA + R+   +Y+ A   +   ++    + E LLE ET+S DE + ++S
Sbjct:  452 DEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGLRDFTAQDNESA------LVKVSDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADEVKRVIS 638          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 69/197 (35.03%), Postives = 115/197 (58.38%), Query Frame = -1
Query:  221 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 802
            + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T +A+ MVT FGM S++G  ++  GS+ GD  +   M  +   S ++A +ID  V++L + A+  A   +   R+ +D +   LLEKET+   E  +I ++  + P
Sbjct:  417 QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVEKRP 609          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 69/197 (35.03%), Postives = 115/197 (58.38%), Query Frame = -1
Query:  221 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 802
            + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T +A+ MVT FGM S++G  ++  GS+ GD  +   M  +   S ++A +ID  V++L + A+  A   +   R+ +D +   LLEKET+   E  +I ++  + P
Sbjct:  417 QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVEKRP 609          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 69/197 (35.03%), Postives = 115/197 (58.38%), Query Frame = -1
Query:  221 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 802
            + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D++Q T +A+ MVT FGM S++G  ++  GS+ GD  +   M  +   S ++A +ID  V++L + A+  A   +   R+ +D +   LLEKET+   E  +I ++  + P
Sbjct:  417 QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVEKRP 609          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 69/197 (35.03%), Postives = 113/197 (57.36%), Query Frame = -1
Query:  221 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 802
            + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P  TTGA  D+++ T +A+ MVT FGM S++G  ++  GS+ GD  +   M  +   S ++A DID  V++L + A+  A   +   R+ +D +   LLEKET+   E   I +   + P
Sbjct:  417 QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEKATKIARSMVTEFGMSSKLG--AVRYGSEHGDPFLGRTMGTQADYSHEVARDIDDEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELEGIFASVEKRP 609          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.553e-25
Identity = 68/189 (35.98%), Postives = 104/189 (55.03%), Query Frame = -1
Query:  236 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 802
            +S+ L AYHE GHA+    T G  PV K T+VPRG+  G+   +P  D T  S++Q+ A +   + GR AEE+IFG  EVT+GA+ D Q  T +A+ MVT +GMS+   +   +    G          SMS +    I+  VK L + AY  A + +  + +    + + LLE ET++G + + IL++
Sbjct:  474 ESRKLTAYHEGGHALVAIHTEGARPVHKATIVPRGRTLGMVSQLPEKDETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYNYEDDG---------KSMSTETRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIKKILAQ 653          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.034e-24
Identity = 65/190 (34.21%), Postives = 107/190 (56.32%), Query Frame = -1
Query:  236 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 802
            + K +VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P  D  L+++QQL  R+   LGGR +EE+ F  P VT+GA+ D +++T +A  MVT  GMS+   W         D+          S++  + ID+ V R+    ++     ++   E ++KI +VLL+KE ++ ++   +L +
Sbjct:  605 EEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG-DIFLLTEQQLKDRMTMSLGGRVSEELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDDSDL------TKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGK 785          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.465e-23
Identity = 61/187 (32.62%), Postives = 106/187 (56.68%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + K+ VA+HE GHA+ G      DP+ KV+++PR QA G   ++P D   L+S+ Q+  ++   L GR +EE+ FG  ++T+GA+ D Q++T +A+  VT +GMS         G+ +  +  R   +   SE  A+ ID  +++L   AYE     +  +++ ++ I + LL+KE ++ +E   IL
Sbjct:  553 EEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQ-YLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSP------TVGTIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQKEVITYNEVETIL 732          
The following BLAST results are available for this feature:
BLAST of CX043421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_STRPN1.280e-2739.57Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH5_ORYSJ2.184e-2737.57Cell division protease ftsH homolog 5, mitochondri... [more]
YME1_CAEEL8.298e-2735.75Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH_MYCTU1.084e-2635.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA1.084e-2635.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO1.084e-2635.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCLE3.153e-2635.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH4_ORYSJ4.553e-2535.98Cell division protease ftsH homolog 4, mitochondri... [more]
RCA1_YEAST5.034e-2434.21Mitochondrial respiratory chain complexes assembly... [more]
RCA1_SCHPO1.465e-2332.62Mitochondrial respiratory chain complexes assembly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10H12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10H12-P24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043421 ID=CX043421; Name=CX043421; organism=Citrus sinensis; type=EST; length=814bp
TGCTTCAAAAATCAGGAGCAAAACTTTAGAAATTTACTCAATCATGACTT
TTTGAGTTAGTGTACAATCCTACTTACATTTGATCAAGAATACAGAGTAT
TATACATTCAAGTGTATGCGTTCAAAGAGTGGCTGAAATTTCAAGTATGG
ATAATATTAATGCCACTCAAACAGATACAGATAATGGTGCTGGAACAGCT
GGAGGGACCCTATTTTCAGCTGGGATTTCGACAAACTCTGAGAGGATTGC
CCGGAATTCATCCCCTGACATTGTTTCCTTCTCAAGAAGAACTTCCACGA
TCTTGTCAATGGCTTCACGGTTGTTCCTTATTTGGCTCAACGCAATCTCA
TAGGCACGGTCTGATAGTCTCTTGACTGCAGCATCAATGTCTTCAGCAAG
CTTCTCAGACATTGAGTTCCTTGCCATCATTCTCATGATGACATCACCAC
TCTGTGATCCGTCCATGAGCGACCATGGGCCAATTTCAGACATTCCAAAT
GTGGTTACCATCTGTTTGGCCAAACCAGTGATCTGCTGCAAATCACCAGC
TGCTCCTGTTGTCACTTCAGGCCCTCCAAAAATCACTTCCTCAGCAGCTC
TACCACCGAGTCCACCAACAATTCTTGCAAAGAGCTGCTGCTTCGATATC
AAGGTGGGGTCATCTGAAGGGATGAACCAGGTAAGACCTCTTGCCTGACC
ACGTGGAACAAGGGTGACTTTTTGAACGGGATCGTGTCCAGGAGTCAAAG
TTCCGCATATTGCGTGGCCAACTTCATGGTATGCAACAAGACTTTTACTC
TTCCCATCTGTCAT
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