CX043421

Overview
NameCX043421
Unique NameCX043421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.262e-23
Identity = 65/189 (34.39%), Postives = 99/189 (52.38%), Query Frame = -1
Query:  242 DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 808
            D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E + +L
Sbjct:  531 DNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.262e-23
Identity = 65/191 (34.03%), Postives = 106/191 (55.50%), Query Frame = -1
Query:  245 MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 814
            +TD   K+  A+HE GHAI    T G  P+ K T++PRG+A G+T+ +P  D   I+K++  AR+   +GG+ AEE+I+G    T+G   DLQ  TG A+ MVT +GMS ++GP +L +  +S    +R +A N + E L +  + A + L+ +  E            + ++ + L+E ET+   E   +
Sbjct:  529 LTDAARKA-TAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSDDVGPVNLSENWESWSNKIRDIADNEVIELLKDSEERARRLLTKKNVE------------LHRLAQGLIEYETLDAHEIEQV 706          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 69/189 (36.51%), Postives = 103/189 (54.50%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + K  VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P D   LIS++Q   R++  LGGR +EE+ F  P VT+GA  D +++T +A  MVT+ GMS +IG  S      +  V          S K A  ID  VK + D A+      +  N + +D + + LL KE ++ ++   +L
Sbjct:  550 EEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFDQNDGNFKV------NKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMIRLL 729          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 66/176 (37.50%), Postives = 97/176 (55.11%), Query Frame = -1
Query:  269 KSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETM 796
            K+ VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QLF R+   LGGR AE++ FG  ++TTGA  DL+++T  A   +  FGMSE       D  + G+     M     SE  A+ ID  V+ L   AY   L  +   RE ++K+   LLEKE +
Sbjct:  560 KTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLPREQ-FLYTREQLFDRMCMMLGGRVAEQLFFG--QITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQGET----MVEKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGRRLLEKEVL 728          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 65/189 (34.39%), Postives = 99/189 (52.38%), Query Frame = -1
Query:  242 DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 808
            D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E + +L
Sbjct:  589 DNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 765          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 67/186 (36.02%), Postives = 104/186 (55.91%), Query Frame = -1
Query:  236 VAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 787
            VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+D+  L++K+QLF      LGGRAAEEV+ G  +++TGA  DL+++T +    V  +G SE +G  S        ++          S + A  ID  V+    +AYE  +  I+ +++ + +I E+LLEKE +  D+   +L E
Sbjct:  582 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--KISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDGFEM------SKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAELLLEKEVLHQDDLVQVLGE 758          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 63/187 (33.69%), Postives = 103/187 (55.08%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L + AY+  ++ +   +  ++K+  +LLEKE +  ++   +L
Sbjct:  566 EEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL----EKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 745          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.495e-23
Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = -1
Query:  242 DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 808
            D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D     + QL A++   +GGR AEE+IFG   +TTGA+ D    T +AK+MVT FGMSE     +M  S +G           +S +    I+  ++ L   +YE A   ++ + +    + E LL  ET+   E + +L
Sbjct:  531 DNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.495e-23
Identity = 63/187 (33.69%), Postives = 101/187 (54.01%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L   AY   ++ +   +  ++K+  +LLEKE +  ++   +L
Sbjct:  565 EEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL----EKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQLL 744          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.240e-22
Identity = 68/206 (33.01%), Postives = 110/206 (53.40%), Query Frame = -1
Query:  206 DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDK----IVEVLLEKETMSGDEFRAILSEFVEIPAENRV 808
            D ++  + A+HE GHA+   LT    P+ KVT++PRG+A GLT F+   D + +++ QL A++   +GGR  EE++FG  +VT GAA D ++ T LA+ MV  FG  S+IGP  + D               +  E+L E     + +  D+    +L+++R    +  K    + E LL  ET++ DE  A+L+  ++ P    V
Sbjct:  415 DDQTNRVSAFHEAGHALVALLTADSIPLHKVTIIPRGEAGGLTSFLQEKDISFMTRAQLLAQLDVLMGGRVGEELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPD---------------TQDEQLGEATRDLIDKEVDQLLNDSLTRVRTLLSSQSKQHKLLAEALLHFETLTKDEVLAVLAGKMKPPKTQSV 605          
The following BLAST results are available for this feature:
BLAST of CX043421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
YMEL1_MOUSE4.262e-2334.39ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YME1_YEAST4.262e-2334.03Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
AFG3_YEAST5.566e-2336.51Mitochondrial respiratory chain complexes assembly... [more]
AFG31_MOUSE5.566e-2337.50AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
YMEL1_HUMAN7.270e-2334.39ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
FTSH3_ORYSJ7.270e-2336.02Cell division protease ftsH homolog 3, mitochondri... [more]
AFG32_HUMAN7.270e-2333.69AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
YMEL1_RAT9.495e-2334.39ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
AFG32_MOUSE9.495e-2333.69AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
YME1_SCHMA1.240e-2233.01Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10H12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10H12-P24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043421 ID=CX043421; Name=CX043421; organism=Citrus sinensis; type=EST; length=814bp
TGCTTCAAAAATCAGGAGCAAAACTTTAGAAATTTACTCAATCATGACTT
TTTGAGTTAGTGTACAATCCTACTTACATTTGATCAAGAATACAGAGTAT
TATACATTCAAGTGTATGCGTTCAAAGAGTGGCTGAAATTTCAAGTATGG
ATAATATTAATGCCACTCAAACAGATACAGATAATGGTGCTGGAACAGCT
GGAGGGACCCTATTTTCAGCTGGGATTTCGACAAACTCTGAGAGGATTGC
CCGGAATTCATCCCCTGACATTGTTTCCTTCTCAAGAAGAACTTCCACGA
TCTTGTCAATGGCTTCACGGTTGTTCCTTATTTGGCTCAACGCAATCTCA
TAGGCACGGTCTGATAGTCTCTTGACTGCAGCATCAATGTCTTCAGCAAG
CTTCTCAGACATTGAGTTCCTTGCCATCATTCTCATGATGACATCACCAC
TCTGTGATCCGTCCATGAGCGACCATGGGCCAATTTCAGACATTCCAAAT
GTGGTTACCATCTGTTTGGCCAAACCAGTGATCTGCTGCAAATCACCAGC
TGCTCCTGTTGTCACTTCAGGCCCTCCAAAAATCACTTCCTCAGCAGCTC
TACCACCGAGTCCACCAACAATTCTTGCAAAGAGCTGCTGCTTCGATATC
AAGGTGGGGTCATCTGAAGGGATGAACCAGGTAAGACCTCTTGCCTGACC
ACGTGGAACAAGGGTGACTTTTTGAACGGGATCGTGTCCAGGAGTCAAAG
TTCCGCATATTGCGTGGCCAACTTCATGGTATGCAACAAGACTTTTACTC
TTCCCATCTGTCAT
back to top