CX043421

Overview
NameCX043421
Unique NameCX043421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.115e-22
Identity = 62/187 (33.16%), Postives = 103/187 (55.08%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QL  R+   LGGR +EE+ FG   +TTGA  DL+++T  A   +  FGM+E       D  + GD+++        SE  A  ID  V+ L + AY+  ++ +   +  ++K+  +LLEKE +  ++   +L
Sbjct:  567 EEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPREQ-YLYTREQLLDRMCMTLGGRVSEEIFFG--RITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL----EKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 746          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 68/185 (36.76%), Postives = 101/185 (54.59%), Query Frame = -1
Query:  236 VAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 787
            VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAEEV+ G   ++TGA  DL+++T +    V  +G SE     L+   Q  D           S + A  ID  V+    +AY+  +  I  ++E + KI E+LLEKE +  D+   +L E
Sbjct:  597 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEEVLIG--RISTGAQNDLEKVTKMTYAQVAVYGFSE--KVGLLSFPQRDD---GFEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQVAKIAEMLLEKEVLHQDDLVRVLGE 773          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.339e-21
Identity = 56/188 (29.79%), Postives = 108/188 (57.45%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            ++K + AYHE GHA+    T       K T++PRG + G+T  +P  D    ++++  A +   +GGRAAEE+++G  ++T+GA  D+ + T +A++MVT FGMS+ IGP SL                +++S      +++ +K L + +YE +LS ++++++ +D +   L++ E ++ +E   ++
Sbjct:  522 ENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL------------EAEMDNLSPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEEMNRVV 697          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.339e-21
Identity = 66/186 (35.48%), Postives = 103/186 (55.38%), Query Frame = -1
Query:  236 VAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 787
            VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G   ++TGA  DL+++T +    V  +G S+ IG   L+   Q  D   +       S +    ID  V+    +AY+  +  I  ++E + +I E+LLEKE +  D+   +L E
Sbjct:  589 VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG--RISTGAQNDLEKVTKMTYAQVAVYGFSDKIG---LLSFPQREDEFSK-----PYSNRTGAMIDEEVREWVGKAYKRTVELIEEHKEQVAQIAELLLEKEVLHQDDLTKVLGE 763          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 65/186 (34.95%), Postives = 100/186 (53.76%), Query Frame = -1
Query:  236 VAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 787
            VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G  +++TGA  DL+++T +    V  +G S+ +G  S        D           S K    ID  V+    +AYE  +  +  ++  + +I E+LLEKE +  D+   IL E
Sbjct:  583 VAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPRDDGYDF------SKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDDLLKILGE 759          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.516e-20
Identity = 71/199 (35.68%), Postives = 110/199 (55.28%), Query Frame = -1
Query:  230 GKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 805
            G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P S+D  L+   +L  R+V  LGGRAAEEV++ G  ++TGA  D+++ T +A + V  +G+++ IGP S+   S  G              KL + +   V  L   A ++ALS +R N + ++ +   L EKE + G+E +  LS  V
Sbjct:  581 GNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSG-RISTGAFDDIRRATDMAYKAVAEYGLNQKIGPVSVATLSGGGIDDSGGSPWGRDQGKLVDLVQKEVTILLQSALDVALSVVRANPDVLEGLGAQLEEKEKVEGEELQKWLSMVV 778          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 60/186 (32.26%), Postives = 96/186 (51.61%), Query Frame = -1
Query:  245 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 802
            + + +VAYHE GHAI G +      V+KVT+VPRG+  G    +P ++    +   L  ++   +GGR  EE++FG    T GA+ D+++ T +A+ MVT +GMS+       +G     +        + SE  A  ID  V+R+   AY+ A   I  +RE    I E LL+ ET+   +  ++
Sbjct:  448 REREIVAYHEAGHAIVGLVLENGSTVRKVTVVPRGRIGGYMLALPDEEIMQPTNFHLQDQLASLMGGRLGEEIVFG--VATPGASNDIEKATHIARSMVTEYGMSKKLGMVSYEGDHQVFIGRDYGQTKTYSEATAVMIDDEVRRILGEAYDRAKEAIETHREQHKAIAEALLKYETLDAKQIMSL 631          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = -1
Query:  230 GKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 805
            G  K++VA HEVGHA+ GT    L PG   V+K++++PR G A G T+  P ++D  L+   +L  R+V  LGGRAAEEV+  G  V+TGA  D+++ T +A + V  +G+++ IGP S+   S  G               L + +   VK L   A ++ALS +R N   ++ +   L E E + G+E +  L   V
Sbjct:  602 GNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSG-RVSTGALDDIRRATDMAYKAVAEYGLNQRIGPISVATLSNGGLDESGGSPWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVEGEELQEWLKSVV 799          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   K L  +AY      + +N + +  +   LLEKE ++ ++  A++
Sbjct:  566 EEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEG----LMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEALI 747          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   + L  RAY      + +N + +  +   LLEKE ++ ++  A++
Sbjct:  529 EEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEG----LVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEALI 710          
The following BLAST results are available for this feature:
BLAST of CX043421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
AFG32_BOVIN2.115e-2233.16AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
FTSH8_ORYSJ3.608e-2236.76Cell division protease ftsH homolog 8, mitochondri... [more]
YME1_SCHPO2.339e-2129.79Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSHA_ARATH2.339e-2135.48Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH1.161e-2034.95Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH7_ARATH1.516e-2035.68Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH_LACLA2.586e-2032.26Cell division protease ftsH homolog OS=Lactococcus... [more]
FTSH7_ORYSJ2.586e-2035.68Cell division protease ftsH homolog 7, chloroplast... [more]
SPG7_MOUSE3.377e-2033.86Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_RAT5.760e-2033.86Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10H12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10H12-P24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043421 ID=CX043421; Name=CX043421; organism=Citrus sinensis; type=EST; length=814bp
TGCTTCAAAAATCAGGAGCAAAACTTTAGAAATTTACTCAATCATGACTT
TTTGAGTTAGTGTACAATCCTACTTACATTTGATCAAGAATACAGAGTAT
TATACATTCAAGTGTATGCGTTCAAAGAGTGGCTGAAATTTCAAGTATGG
ATAATATTAATGCCACTCAAACAGATACAGATAATGGTGCTGGAACAGCT
GGAGGGACCCTATTTTCAGCTGGGATTTCGACAAACTCTGAGAGGATTGC
CCGGAATTCATCCCCTGACATTGTTTCCTTCTCAAGAAGAACTTCCACGA
TCTTGTCAATGGCTTCACGGTTGTTCCTTATTTGGCTCAACGCAATCTCA
TAGGCACGGTCTGATAGTCTCTTGACTGCAGCATCAATGTCTTCAGCAAG
CTTCTCAGACATTGAGTTCCTTGCCATCATTCTCATGATGACATCACCAC
TCTGTGATCCGTCCATGAGCGACCATGGGCCAATTTCAGACATTCCAAAT
GTGGTTACCATCTGTTTGGCCAAACCAGTGATCTGCTGCAAATCACCAGC
TGCTCCTGTTGTCACTTCAGGCCCTCCAAAAATCACTTCCTCAGCAGCTC
TACCACCGAGTCCACCAACAATTCTTGCAAAGAGCTGCTGCTTCGATATC
AAGGTGGGGTCATCTGAAGGGATGAACCAGGTAAGACCTCTTGCCTGACC
ACGTGGAACAAGGGTGACTTTTTGAACGGGATCGTGTCCAGGAGTCAAAG
TTCCGCATATTGCGTGGCCAACTTCATGGTATGCAACAAGACTTTTACTC
TTCCCATCTGTCAT
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