CX043421
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20 Identity = 62/189 (32.80%), Postives = 104/189 (55.03%), Query Frame = -1 Query: 242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802 + + +VA+HE GHA+ G + + V KV++ PR A G +P D L +K+QLF R+ LGGRA+E + F EVT+GA DL+++T +A MV FGM+ IGP S + + + + R S+ L + +D + L +AY +++N + + + LLEKE ++ ++ A++ Sbjct: 566 EEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEG----LMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEALI 747
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.734e-19 Identity = 66/199 (33.17%), Postives = 109/199 (54.77%), Query Frame = -1 Query: 230 GKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 805 G K++VA HE GHA+ GT L G V+K++++PR G A G T+ P+ +D L+ +L R+V LGGRAAEEV++ G ++TGA D+++ T +A + V +G++E IGP S+ S G L + + V L A ++AL+ +R N + ++ + L ++E + G+E + L+ V Sbjct: 585 GSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSG-RISTGALDDIRRATDMAYKAVAEYGLNEKIGPVSVATLSAGGIDDSGGSPWGRDQGHLVDLVQREVTNLLQSALDVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVV 782
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12 Identity = 58/215 (26.98%), Postives = 100/215 (46.51%), Query Frame = -1 Query: 206 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSL--------MDGSQSGDVIMRM-----MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 802 + K L+A HE GH + L P D L+P G+ ++ F P +D + + ++V GGR AE V+F G VT G DL++IT +A++MV + + +G L + + G++I + MS +++E + R + E+A++ +R NR +D I LLEK ++G E + + + E+ V Sbjct: 761 EKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVF-GDNVTDGGKDDLEKITKIAREMVISPQSARLGLTQLVKKIGMVDLPDNPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFV 974 The following BLAST results are available for this feature:
BLAST of CX043421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043421 ID=CX043421; Name=CX043421; organism=Citrus sinensis; type=EST; length=814bpback to top |