CX043421

Overview
NameCX043421
Unique NameCX043421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:564..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20
Identity = 62/189 (32.80%), Postives = 104/189 (55.03%), Query Frame = -1
Query:  242 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 802
            + + +VA+HE GHA+ G +    + V KV++ PR   A G    +P D   L +K+QLF R+   LGGRA+E + F   EVT+GA  DL+++T +A  MV  FGM+  IGP S  +  +     +  + R   S+ L + +D   + L  +AY      +++N + +  +   LLEKE ++ ++  A++
Sbjct:  566 EEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEG----LMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEALI 747          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.734e-19
Identity = 66/199 (33.17%), Postives = 109/199 (54.77%), Query Frame = -1
Query:  230 GKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 805
            G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P+ +D  L+   +L  R+V  LGGRAAEEV++ G  ++TGA  D+++ T +A + V  +G++E IGP S+   S  G               L + +   V  L   A ++AL+ +R N + ++ +   L ++E + G+E +  L+  V
Sbjct:  585 GSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSG-RISTGALDDIRRATDMAYKAVAEYGLNEKIGPVSVATLSAGGIDDSGGSPWGRDQGHLVDLVQREVTNLLQSALDVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVV 782          
BLAST of CX043421 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 58/215 (26.98%), Postives = 100/215 (46.51%), Query Frame = -1
Query:  206 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSL--------MDGSQSGDVIMRM-----MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 802
            + K L+A HE GH +   L P  D      L+P G+   ++ F P +D       +   +  ++V   GGR AE V+F G  VT G   DL++IT +A++MV +   + +G   L        +  +  G++I        +    MS +++E     + R  +   E+A++ +R NR  +D I   LLEK  ++G E    + +   +  E+ V
Sbjct:  761 EKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVF-GDNVTDGGKDDLEKITKIAREMVISPQSARLGLTQLVKKIGMVDLPDNPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEELAMNALRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMFEDFV 974          
The following BLAST results are available for this feature:
BLAST of CX043421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
SPG7_HUMAN7.523e-2032.80Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
FTSH9_ARATH3.734e-1933.17Cell division protease ftsH homolog 9, chloroplast... [more]
FTSHC_ARATH9.848e-1226.98Cell division protease ftsH homolog 12, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10H12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10H12-P24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043421 ID=CX043421; Name=CX043421; organism=Citrus sinensis; type=EST; length=814bp
TGCTTCAAAAATCAGGAGCAAAACTTTAGAAATTTACTCAATCATGACTT
TTTGAGTTAGTGTACAATCCTACTTACATTTGATCAAGAATACAGAGTAT
TATACATTCAAGTGTATGCGTTCAAAGAGTGGCTGAAATTTCAAGTATGG
ATAATATTAATGCCACTCAAACAGATACAGATAATGGTGCTGGAACAGCT
GGAGGGACCCTATTTTCAGCTGGGATTTCGACAAACTCTGAGAGGATTGC
CCGGAATTCATCCCCTGACATTGTTTCCTTCTCAAGAAGAACTTCCACGA
TCTTGTCAATGGCTTCACGGTTGTTCCTTATTTGGCTCAACGCAATCTCA
TAGGCACGGTCTGATAGTCTCTTGACTGCAGCATCAATGTCTTCAGCAAG
CTTCTCAGACATTGAGTTCCTTGCCATCATTCTCATGATGACATCACCAC
TCTGTGATCCGTCCATGAGCGACCATGGGCCAATTTCAGACATTCCAAAT
GTGGTTACCATCTGTTTGGCCAAACCAGTGATCTGCTGCAAATCACCAGC
TGCTCCTGTTGTCACTTCAGGCCCTCCAAAAATCACTTCCTCAGCAGCTC
TACCACCGAGTCCACCAACAATTCTTGCAAAGAGCTGCTGCTTCGATATC
AAGGTGGGGTCATCTGAAGGGATGAACCAGGTAAGACCTCTTGCCTGACC
ACGTGGAACAAGGGTGACTTTTTGAACGGGATCGTGTCCAGGAGTCAAAG
TTCCGCATATTGCGTGGCCAACTTCATGGTATGCAACAAGACTTTTACTC
TTCCCATCTGTCAT
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