DC900211

Overview
NameDC900211
Unique NameDC900211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900211_ssr73 microsatellite DC900211_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5644 contig Csv1_Contig5644:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_TRIGR (60S ribosomal protein L22 OS=Tripneustes gratilla GN=RPL22 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 436
            F IDC  PVED IMD ++ E+FLQERIKV GK   L  ++ + R+K+K+TVTS+  FS              +N+RDWLRV+A+NK+   YELRYF I +++ EEED
Sbjct:   25 FTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_XENTR (60S ribosomal protein L22 OS=Xenopus tropicalis GN=rpl22 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 436
            F +DC  PVED IMD A+ E+FL +RIKV GK G LG   V++ R K+KITV+S+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_XENLA (60S ribosomal protein L22 OS=Xenopus laevis GN=rpl22 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 436
            F +DC  PVED IMD A+ E+FL +RIKV GK G LG   V++ R K+KITV+S+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_DROME (60S ribosomal protein L22 OS=Drosophila melanogaster GN=RpL22 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.012e-19
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 436
            F IDC    ED IMD+A  EK+++ R+KV GK   LG++VT  R K K+ V+SD +FS              +++RDW+RV+A+ KD   YELRYF I+ N+ E++D
Sbjct:  193 FTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDS--YELRYFRISSNDDEDDD 297          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22L_XENTR (60S ribosomal protein L22-like 1 OS=Xenopus tropicalis GN=rpl22l1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  113 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 436
            +F +D   PVED I D  + E+FL+ERIKV GK G LG  V + R K+KITV+S+  FS              +N+RDWLRV+AS  D+  YELRYF I++++  E +
Sbjct:   14 SFTLDLTHPVEDGIFDSVNFEQFLKERIKVNGKTGNLGSIVHIGRLKSKITVSSEKKFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDDESESE 119          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_GADMO (60S ribosomal protein L22 (Fragment) OS=Gadus morhua GN=rpl22 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGE 427
            F +DC  PVED IMD A+ E+FLQERIKV GK+G LG+  V++ R  +KI+V S+  FS              +N+RDWLRV+A+ K+   YELRYF I ++E E
Sbjct:   18 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 120          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22L_HUMAN (60S ribosomal protein L22-like 1 OS=Homo sapiens GN=RPL22L1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 433
            F +D   PVED I D  + E+FL+E++KV GK G LG+ V + R K KITV S+  FS              +N+RDWLRV+AS  D+  YELRYF I+++E E E
Sbjct:   16 FNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDESE 119          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22L_MOUSE (60S ribosomal protein L22-like 1 OS=Mus musculus GN=Rpl22l1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENE--GEEED 436
            F +D   PVED I D  + E+FL+E++KV GK G LG+ V + R K KITV S+  FS              +N+RDWLRV+AS  D+  YELRYF I+++E   E ED
Sbjct:   16 FHLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERLKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDGSESED 122          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22_SCHPO (60S ribosomal protein L22 OS=Schizosaccharomyces pombe GN=rpl22 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRE-KTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 433
            ++ID    V DKI D+A+ EK+L +RIKV GK G LG SV V+RE  +KI V +  +FS              H++RDWLRV+++ K   VYELRY+N+     EEE
Sbjct:   12 YIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116          
BLAST of DC900211 vs. ExPASy Swiss-Prot
Match: RL22L_BOVIN (60S ribosomal protein L22-like 1 OS=Bos taurus GN=RPL22L1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  116 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 433
            F +D    VED I D  + E+FL+E++KV GK G LG+ V + R K KI V S+  FS              +N+RDWLRV+AS  D+  YELRYF I+++E E E
Sbjct:   16 FNLDLTHAVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKIIVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDESE 119          
The following BLAST results are available for this feature:
BLAST of DC900211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL22_TRIGR8.277e-2249.5360S ribosomal protein L22 OS=Tripneustes gratilla ... [more]
RL22_XENTR5.365e-2150.0060S ribosomal protein L22 OS=Xenopus tropicalis GN... [more]
RL22_XENLA5.365e-2150.0060S ribosomal protein L22 OS=Xenopus laevis GN=rpl... [more]
RL22_DROME1.012e-1943.9360S ribosomal protein L22 OS=Drosophila melanogast... [more]
RL22L_XENTR5.021e-1945.3760S ribosomal protein L22-like 1 OS=Xenopus tropic... [more]
RL22_GADMO6.558e-1948.5760S ribosomal protein L22 (Fragment) OS=Gadus morh... [more]
RL22L_HUMAN6.558e-1946.2360S ribosomal protein L22-like 1 OS=Homo sapiens G... [more]
RL22L_MOUSE3.255e-1845.8760S ribosomal protein L22-like 1 OS=Mus musculus G... [more]
RL22_SCHPO1.615e-1744.8660S ribosomal protein L22 OS=Schizosaccharomyces p... [more]
RL22L_BOVIN2.755e-1744.3460S ribosomal protein L22-like 1 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC900211 VSS Citrus sinensis cDNA clone VS28248 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900211 ID=DC900211; Name=DC900211; organism=Citrus sinensis; type=EST; length=616bp
CTGCAGTGCTCTTCTCCTGTAAATTGTACAATTCGTAGTGCGGCGGAGCA
GAGACGGGAAAATGAGTCGCGGAGCAGCAGCAGCAGGGGTGAAGGGGAAG
AAAAAGGGAGCGACCTTCGTGATAGACTGCGGGAAGCCTGTGGAGGACAA
AATCATGGACATTGCGTCCTTGGAAAAGTTCCTCCAGGAGCGGATCAAGG
TCGGCGGCAAGGCTGGTGCCCTTGGGGATTCAGTTACCGTCACCCGTGAG
AAGACCAAGATCACCGTCACTTCTGACAGCAACTTCTCTAAGAGGTATCT
TAAATATTTGACCAAGAAGTACTTGAAGAAACACAATGTAAGAGATTGGC
TCCGAGTAATTGCTTCAAACAAGGACCGAAGTGTCTATGAGCTGCGATAC
TTCAACATTGCTGAGAATGAGGGAGAGGAGGAAGACTGAAGATCCATTTC
AGTATTTCCTCATATTATATCTATTCTGATTACTTGTTCTAGCTCTTTTT
TCTTTTTTTCTCCTGCGATCAAATCTGTGGACTTGTTTGAATTGTTTATG
AGATCATTCTTAGTTTATGTTCTGNTGAAATTTTGNTTACTTTTTAGATA
TATGGTTTTTTTTTTT
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