DC900207

Overview
NameDC900207
Unique NameDC900207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
MEF2C_HUMAN1.149e-1157.41Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN1.149e-1157.41Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA1.149e-1157.41Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN1.149e-1157.41Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionDC900207 VSS Citrus sinensis cDNA clone VS28244 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bp
AAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAAGAATCCTTATTCCTCT
TTAGGTCTTCTTTCCAGGTGTAGCTCAAGCAAGTTACCAGCAACCATGGA
GTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAA
GAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTC
ACCTTCTGTAAACGCCGAAATGGATTGTTGAAGAAAGCTTATGAACTGTC
TGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCC
GCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTAC
AAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAA
CACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGG
AGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTA
AACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGG
CAGAGTCAGATCCAGAACAAGT
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