DC900207

Overview
NameDC900207
Unique NameDC900207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:113..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 64/130 (49.23%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S +  T++RY ++C  +S   +  E    +  QE  KL+ ++  +Q   R+ILGE L  L+ KEL+ LE ++E  + ++RSR
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERY-RSCNYNSQDAAAPENEINY--QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSR 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 64/130 (49.23%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S +  T++RY ++C  +S   +  E    +  QE  KL+ ++  +Q   R+ILGE L  L+ KEL+ LE ++E  + ++RSR
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERY-RSCNYNSQDAAAPENEINY--QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSR 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVR 560
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+  S++ TIDRYK    D  N  +I + + Q  + +   L +++  +    R ILGE L   + +EL+ LE +LEK +  +R
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTI-QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIR 139          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSRTS 572
            NT NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LY+YA +S    I    +RY  A     +  S T+ N   +  E  KL+ ++  IQ   +H++GE L +LN KEL+ LE +LE  +  +RSR S
Sbjct:   13 NTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGN---WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKS 144          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK---ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS 563
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K      + + P     A     QQE  KL+ +   +Q   R++LGE L  L+ KEL++LE +L+  + ++R+
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRA 144          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATI----DRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSRTS 572
            N  NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LYEYA +S    I    +RY  A     +  S T+ N   +  E  KL+ ++  IQ   +H++GE L +LN KEL+ LE +LE  +  +RSR S
Sbjct:   13 NKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGN---WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKS 144          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.398e-25
Identity = 59/132 (44.70%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FSS G+LY++A++S+++ IDRY K+  +     NP S      +F+Q+EA  LR+++  +Q  +R ++GE L+ L+  EL +LE ++E  +  +R R
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPAS----EVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMR 140          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVR 560
            N  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ + S +  T++RY+K    S    +      +   +E  KL+ +   +Q   R++LGE L  LN KEL+ LE +L+  + +VR
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVR 140          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            NTTNRQVTF KRR GLLKKA+ELSVLCDAE+ LI+FSS G+L+EY  A++S++  I+RY+K      +   ITE + Q    E T+++ +  ++Q   R ++GE L++L   EL +L  +LE    RVRSR
Sbjct:   13 NTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKV-----SGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSR 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.384e-25
Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK--------ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYAN+S +   ++RY++           D ++PGS T         E  KL+ ++  +Q   +H +GE L +LN KEL+NLE +L+  +  +RSR
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWT--------LEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSR 142          
The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
MADS1_ORYSJ4.804e-2649.23MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI4.804e-2649.23MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD56_ORYSI4.804e-2651.56MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD14_ORYSI6.275e-2648.89MADS-box transcription factor 14 OS=Oryza sativa s... [more]
SEP3_ARATH1.070e-2548.48Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD14_ORYSJ1.070e-2548.89MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL21_ARATH1.398e-2544.70Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
SEP2_ARATH2.384e-2549.22Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
GGM13_GNEGN2.384e-2548.85MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL8_SOLTU2.384e-2546.38Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionDC900207 VSS Citrus sinensis cDNA clone VS28244 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bp
AAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAAGAATCCTTATTCCTCT
TTAGGTCTTCTTTCCAGGTGTAGCTCAAGCAAGTTACCAGCAACCATGGA
GTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAA
GAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTC
ACCTTCTGTAAACGCCGAAATGGATTGTTGAAGAAAGCTTATGAACTGTC
TGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCC
GCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTAC
AAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAA
CACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGG
AGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTA
AACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGG
CAGAGTCAGATCCAGAACAAGT
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