DC900207

Overview
NameDC900207
Unique NameDC900207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:113..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 46/130 (35.38%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLN-FKELKNLEARLEKGIGRVRSR 566
            + T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ +  V      ++      +     T  + +    E T+LR +I +++   R   GE LS+++   EL  L+ +LE  + +V +R
Sbjct:   13 DATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHAR 142          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQ--QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N T RQVTF KRR GL+KK  ELS+LCDA + LIVFS+ G+L E+ +  N +   IDRY       +N   + + +    Q   E   LRR+   ++   R   G  L+++   EL  LE +LE  + +VR R
Sbjct:   13 NQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYL-----HTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRER 140          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +++ +++   +DRY K  AD        +     +Q +A         ++ ++  ++G  +  ++   L  LE  LE  +   R++
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD--------DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAK 134          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSR 566
            N TNRQVTF KRRNG++KKA EL+VLCDA+V+L++ SS  +L+ Y +   S++   D Y+K                  ++++  +++ Q R++  LN  +       +G  L  L   EL  L+  +E+ I ++R++
Sbjct:   13 NKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI------------EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNK 138          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            N  NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS  +L++Y++  +   + RY
Sbjct:   15 NERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY 71          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  RL++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ G++KKAYELSVLCD E+ALI+FSS  +LY+YA+  +   + +Y
Sbjct:   16 NRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
MAD30_ORYSJ1.894e-1435.38MADS-box transcription factor 30 OS=Oryza sativa s... [more]
TT16_ARATH1.603e-1339.10Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
FLC_ARATH2.734e-1333.85MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
CMB2_DIACA2.734e-1333.33MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
SRFC_DICDI5.157e-1254.39Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN5.157e-1259.26Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2_DROME6.735e-1259.26Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2C_PONAB1.149e-1157.41Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG1.149e-1157.41Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE1.149e-1157.41Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionDC900207 VSS Citrus sinensis cDNA clone VS28244 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bp
AAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAAGAATCCTTATTCCTCT
TTAGGTCTTCTTTCCAGGTGTAGCTCAAGCAAGTTACCAGCAACCATGGA
GTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAA
GAGGCAAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTC
ACCTTCTGTAAACGCCGAAATGGATTGTTGAAGAAAGCTTATGAACTGTC
TGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCC
GCCTTTATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTAC
AAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAA
CACTCAGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGG
AGATTCAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTA
AACTTTAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGG
CAGAGTCAGATCCAGAACAAGT
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