DC900207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14 Identity = 46/130 (35.38%), Postives = 75/130 (57.69%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLN-FKELKNLEARLEKGIGRVRSR 566 + T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ + V ++ + T + + E T+LR +I +++ R GE LS+++ EL L+ +LE + +V +R Sbjct: 13 DATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHAR 142
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13 Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQ--QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N T RQVTF KRR GL+KK ELS+LCDA + LIVFS+ G+L E+ + N + IDRY +N + + + Q E LRR+ ++ R G L+++ EL LE +LE + +VR R Sbjct: 13 NQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYL-----HTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRER 140
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13 Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +++ +++ +DRY K AD + +Q +A ++ ++ ++G + ++ L LE LE + R++ Sbjct: 13 NKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD--------DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAK 134
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13 Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSR 566 N TNRQVTF KRRNG++KKA EL+VLCDA+V+L++ SS +L+ Y + S++ D Y+K ++++ +++ Q R++ LN + +G L L EL L+ +E+ I ++R++ Sbjct: 13 NKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI------------EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNK 138
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12 Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3 Query: 180 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350 N NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS +L++Y++ + + RY Sbjct: 15 NERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY 71
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350 NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S RL++YA+ + + +Y Sbjct: 16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350 NRQVTF KR+ G++KKAYELSVLCD E+ALI+FSS +LY+YA+ + + +Y Sbjct: 16 NRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11 Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350 NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S +L++YA+ + + +Y Sbjct: 16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11 Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350 NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S +L++YA+ + + +Y Sbjct: 16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
BLAST of DC900207 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11 Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 189 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 350 NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S +L++YA+ + + +Y Sbjct: 16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69 The following BLAST results are available for this feature:
BLAST of DC900207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900207 ID=DC900207; Name=DC900207; organism=Citrus sinensis; type=EST; length=572bpback to top |