DC900200

Overview
NameDC900200
Unique NameDC900200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.813e-12
Identity = 38/117 (32.48%), Postives = 53/117 (45.30%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +LVDGFN+PM  +P  G   C  + C A +   CP  L+ +          C + C    T+E CC N    P +C  +  S FFK  CP   +Y  D P  +  C      +V+FC
Sbjct:  122 SLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQG--------GCNNPCTVIKTNEFCCTN---GPGSCGPTDLSRFFKARCPDAYSYPQDDPPSLFTCPPGTNYRVVFC 225          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.674e-12
Identity = 37/117 (31.62%), Postives = 53/117 (45.30%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +L+DGFNVPM+  P  G G      C  D+ A CP  L+            C + C  F  DE CC    ++   C  +++S +FK  CP   +Y  D  +    C +    KV+FC
Sbjct:  120 SLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDG--------VCNNACPVFKKDEYCCVG--SAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 226          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.267e-12
Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSS-PRELKVIFC 735
            +++DGFN+PM+  P + G G C  + C A++   CP +L+V   PG      C + C  FG  + CC     +   C  +  S FFK  CP   +Y  D P+    C S   + KV+FC
Sbjct:  121 SVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSLRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCQSWTTDYKVMFC 226          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: NP24_SOLLC (Protein NP24 OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.185e-12
Identity = 40/119 (33.61%), Postives = 57/119 (47.90%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKG-VCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDC-SSPRELKVIFC 735
            +LVDGFN+PMT  P +  G  C  + C A++   CP+ L+V   PG      C + C  FG  + CC     +   C  +  S+FFK  CP   +Y  D P+    C       +V+FC
Sbjct:  120 SLVDGFNIPMTFAPTKPSGGKCHAIHCTANINGECPRALKV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFC 225          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.823e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHE-GKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSS-PRELKVIFC 735
            +++DGFN+PM+  P + G G C  + C A++   CP +L+V   PG      C + C  FG  + CC     +   C  +  S +FK  CP   +Y  D P+    C+S   + KV+FC
Sbjct:  121 SVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 226          
BLAST of DC900200 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.062e-11
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 1
Query:  385 ALVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 735
            +++DGFNVP +  P  G G      C  D+ A CP  L+            C + C  F  DE CC    ++   C  +++S +FK  CP   +Y  D  +    C +    KV+FC
Sbjct:   99 SILDGFNVPYSFLPDGGSGCSRGPRCAVDVNARCPAELRQDG--------VCNNACPVFKKDEYCCVG--SAANNCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205          
The following BLAST results are available for this feature:
BLAST of DC900200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PRR2_TOBAC2.813e-1232.48Pathogenesis-related protein R minor form OS=Nicot... [more]
ZEAM_MAIZE3.674e-1231.62Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
OS35_SOLCO6.267e-1233.61Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
NP24_SOLLC8.185e-1233.61Protein NP24 OS=Solanum lycopersicum PE=1 SV=2[more]
OLPA_TOBAC1.823e-1132.77Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
IAAT_MAIZE4.062e-1129.91Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionDC900200 VSS Citrus sinensis cDNA clone VS28237 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900200 ID=DC900200; Name=DC900200; organism=Citrus sinensis; type=EST; length=1028bp
CTAGTCTCGAGTTTTTTTTTTTTTTTTTTATTACCAAGAAATTTTAAAAT
ATAGAATTAAAATTGAAACGACGAGGAGAAAATCCAAAGAAGTATCTTAA
ATCTCCAACATAAGCCCATAATCGGATCCTCATGACATAACACAATAACA
ATAGAAATATCTTAGTGACATTGCCAAAACAAAACATCCTAAATCCATAA
ATTCTATGATTAAACAAAAACTTTAAAAACAACCTCTTATCAAAATTAGT
CAACGCTCTGCATAATATCCTCTGGGGTGAACTTGGTACCCTTCTCCTTG
TCGGCGGCGGCACGTCCCTTGGCCTTGCGATCGAGCAAAGACTTCCTGTC
CTTGTCCAGACGGAGCTTGGTGATCACGACCTTTGCTCTAGTCGACGGCT
TCAACGTCCCCATGACTGTCACCCCGCACGAGGGCAAGGGCGTCTGTCCG
GTAGTGGGTTGTCGCGCTGACCTGCTAGCCACGTGTCCTCAGAACCTGCA
GGTGAGGTCACCGCCGGGTCACGGCCGCGTGGTGGCATGTAAGAGTGGGT
GTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAACCATTACAACAGT
CCGCAGACATGCCGGGCTTCGAGCTTTTCGGAGTTCTTCAAGCACGCTTG
TCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCTCATGCATGACT
GCTCCTCGCCACGTGAGCTAAAAGTTATTTTCTGTCACTAGAGAAGCATG
AGAATAATAATAAGCTGGAGCATCAAGCTTCACAGTGCTTAGGATTGTTG
TGTTTGTTTTCGTCAATTAGCAGTATCTTGCTTTTTAATTAATCTCGTAA
CTAAAAAGAGAAATTAAAAATGATCAATGTGAGCTTGTGTCATGTTGGGT
GTCATCAGTCTGTACGTTGTGGTGTGTTTTGTAAGTTCCAATTCAATTTG
GAATGGGAATGTAATGAGTTTGATGTGTGGTATATTTTCTTTTTTCATGA
AAAAGTAAAATAGAAATATTTTTCTTCA
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