CX043383

Overview
NameCX043383
Unique NameCX043383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44P_CANMA (60S ribosomal protein L44 P OS=Candida maltosa GN=L41P1A PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.981e-43
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK +ECRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_PICGU (60S ribosomal protein L44 OS=Pichia guilliermondii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.893e-43
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT++TYCK K+CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKDCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_YEAST (60S ribosomal protein L42 OS=Saccharomyces cerevisiae GN=RPL42A PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.133e-42
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_SCHPO (60S ribosomal protein L44 OS=Schizosaccharomyces pombe GN=rpl44 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.479e-42
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVN+PKT+KTYC  K CRKHT+H+VTQYKKG DS  AQGKRRYDRKQSG+GGQTKPVFHKKAK TKK+VLRL+C  CK+ +Q  +KRCKHFE+GG+KK KG +
Sbjct:    1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAA 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_YARLI (60S ribosomal protein L44 OS=Yarrowia lipolytica GN=RPL44 PE=3 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.523e-42
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVN+PKT+ TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTK +FHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKQIFHKKAKTTKKVVLRLECVKCKVKMQLALKRCKHFELGGDKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_KLULA (60S ribosomal protein L44 OS=Kluyveromyces lactis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.523e-42
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK KECRKH  HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHAQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_DEBOC (60S ribosomal protein L44 OS=Debaryomyces occidentalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.523e-42
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTK +FHKKAKTTKK+VL+L+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQRGYGGQTKQIFHKKAKTTKKVVLKLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_ASHGO (60S ribosomal protein L44 OS=Ashbya gossypii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 5.621e-42
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +F KKAKTTKK+VLRL+C  CK  +Q P+KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKACRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKQIFRKKAKTTKKVVLRLECLSCKTKAQLPLKRCKHFELGGEKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_KLUMA (60S ribosomal protein L44 OS=Kluyveromyces marxianus GN=RPL44 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 9.588e-42
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK K CRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKACRKHSQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44Q_CANMA (60S ribosomal protein L44 Q OS=Candida maltosa GN=RIM-C PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.252e-41
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVN+PKT+ TYCK K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKG 101          
The following BLAST results are available for this feature:
BLAST of CX043383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44P_CANMA2.981e-4379.2160S ribosomal protein L44 P OS=Candida maltosa GN=... [more]
RL44_PICGU3.893e-4379.2160S ribosomal protein L44 OS=Pichia guilliermondii... [more]
RL44_YEAST1.133e-4279.2160S ribosomal protein L42 OS=Saccharomyces cerevis... [more]
RL44_SCHPO1.479e-4273.7960S ribosomal protein L44 OS=Schizosaccharomyces p... [more]
RL44_YARLI2.523e-4278.2260S ribosomal protein L44 OS=Yarrowia lipolytica G... [more]
RL44_KLULA2.523e-4277.2360S ribosomal protein L44 OS=Kluyveromyces lactis ... [more]
RL44_DEBOC2.523e-4278.2260S ribosomal protein L44 OS=Debaryomyces occident... [more]
RL44_ASHGO5.621e-4277.2360S ribosomal protein L44 OS=Ashbya gossypii GN=RP... [more]
RL44_KLUMA9.588e-4276.2460S ribosomal protein L44 OS=Kluyveromyces marxian... [more]
RL44Q_CANMA1.252e-4176.2460S ribosomal protein L44 Q OS=Candida maltosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10F11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F11-L22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043383 ID=CX043383; Name=CX043383; organism=Citrus sinensis; type=EST; length=547bp
GCTCTCACCTCCTCGTCGCCGCCGCCGGCCATCATGGTGAACGTTCCCAA
GACTAAGAAGACCTACTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGC
ACAAGGTGACACAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGG
AAGAGACGGTATGATCGTAAACAGTCTGGCTATGGTGGTCAGACCAAGCC
TGTCTTCCACAAGAAGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCC
AATGCCAGGGTTGCAAGCATGTGTCTCAACATCCCATCAAGAGGTGCAAG
CACTTTGAAATTGGTGGAGACAAGAAGGGAAAGGGAACATCTCTTTTCTA
AATGCCTTTATTTTTGTTTGTATGCTTTTTACTTTGCTGCACTTGATGGA
ACTTTACCCAGTATGAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGA
TGCTGTTAATTTAAAACTTGAAGCGGTTGTTTGTTAAGTGCTTATTTTAT
CAGTTAATTTTAGAATTGGATTTTTTGACCNAAAAAAAAAAAAAAAA
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