DC900196

Overview
NameDC900196
Unique NameDC900196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.467e-26
Identity = 53/107 (49.53%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   65 DDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 385
            D+P + A  FT+Q++++ HPG I  GY PV  CHT+ +A  F ELV K++  +G+  E+ P FLK G+A +VK+ PTKP+V+E   D P +GRFA+RDM QTVA G+
Sbjct:  299 DNPPKVAKEFTAQIVVLQHPGVITVGYTPVFHCHTAQVACTFLELVQKMNPATGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.467e-26
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 388
            +RG      D+P     +FT+Q++++ HP  I  GY PV+  HT+ IA +F EL  KID R+G+  E+ P+FLK GDA +VK+ PT+PMV+E   D PP+GRFA+RDM  T+  G++
Sbjct:  300 RRGDVAGHPDNPPTVVKDFTAQLVVLQHPTAITVGYTPVVHAHTAQIACRFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 54/121 (44.63%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   38 QRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 400
            +RG      D+    A    ++++++ HP  IG GYAPV+  HT+ + V+ +ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  317 KRGDVLGKPDNVPTVAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   65 DDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 397
            D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A   +E+  K+D R+G   E+ P F+K GDA ++ + PTKPMV+E   + P LGRFA+RDM  T+A G+ +NV
Sbjct:  311 DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 55/130 (42.31%), Postives = 85/130 (65.38%), Query Frame = 2
Query:   11 QRKNVLQGSQRGLCXQPKDDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 400
            ++K++ +G   G      D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  305 EKKDIKRGDVAGSL----DVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 2
Query:   65 DDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 400
            D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+ +V+
Sbjct:  318 DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 51/112 (45.54%), Postives = 79/112 (70.54%), Query Frame = 2
Query:   65 DDPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 400
            D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA + +E+  K+D R+G+ +EK P+FLK GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++ +V+
Sbjct:  319 DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 51/111 (45.95%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   77 RXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 409
            R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  318 RPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 51/111 (45.95%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   77 RXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 409
            R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ +++K +
Sbjct:  318 RPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of DC900196 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   68 DPARXAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 409
            +P   A +FT+Q++++ HP  + +GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
The following BLAST results are available for this feature:
BLAST of DC900196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METTH4.467e-2649.53Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_ARCFU4.467e-2646.15Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_PYRAE5.834e-2644.63Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_METTP5.834e-2645.05Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_DESMO5.834e-2642.31Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_STAMF7.619e-2647.32Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_HYPBU7.619e-2645.54Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_THEON9.951e-2645.95Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_THECE1.300e-2545.95Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METVA1.300e-2546.49Elongation factor 1-alpha OS=Methanococcus vanniel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900196 VSS Citrus sinensis cDNA clone VS28233 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900196 ID=DC900196; Name=DC900196; organism=Citrus sinensis; type=EST; length=730bp
CAATGTGGCTCAACGTAAGAACGTGCTGCAAGGATCCCAGCGTGGTTTGT
GCTNCCAACCGAAGGATGATCCGGCCAGGNAAGCTGCCAACTTCACCTCA
CAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCC
AGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCG
TGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAG
TTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCC
CATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCG
TTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAA
AAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAA
GTGAATCGGGTTGGTTAATGTTGCTTTATCCGCAGATGGAGTCTATTTTA
ATAATTGTAGTTATACAAACTTGGTTATTTTTGGTACTGTTATAGTTCGA
TGCATGCTTTCCTTTTTAGGTTTTAGTTTGTTGCCTTTGGTGTCGGGTAN
NGATTCCCAGAATTGGGTGCTTGACAGGCGGTGGCGCAGCTCTAACCTGG
AGTCTCAATTTTATTAATAGTTATGGTCTTTGTTTGTATTGATACTTGAG
GTGGTTCGGTTTCATCTGAATCGGCTCAGA
back to top