DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.729e-63
Identity = 121/238 (50.84%), Postives = 161/238 (67.65%), Query Frame = 1
Query:    4 RFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NP  + FVP++   GDN+ ++S    WY GPTL + +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+
Sbjct:   41 RLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDA--KSGIQP--QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPANITFVPVASLHGDNVFKKSDRTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEI 272          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.949e-63
Identity = 124/234 (52.99%), Postives = 162/234 (69.23%), Query Frame = 1
Query:    1 ERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPS 696
            E   K+  EM ++  SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y +  ++++  +V   LK +GY  +  P +P S + GDN++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG LK G  V F P+
Sbjct:   36 ETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVTINKMDMVN--YDQKVFEKVKAQVEKLLKTLGY--KDFPVIPTSAWNGDNVVKKSDKMPWYNGPTLIEALDQIPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPA 258          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.569e-63
Identity = 123/234 (52.56%), Postives = 162/234 (69.23%), Query Frame = 1
Query:    1 ERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPS 696
            E   K+  EM ++  SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y +  ++++  +V   L+ +GY  +  P +P S + GDN++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG LK G  V F P+
Sbjct:   36 ETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVTINKMDMVN--YDQKVFEKVKAQVEKLLRTLGY--KDFPVIPTSAWNGDNIVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPA 258          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.569e-63
Identity = 117/223 (52.47%), Postives = 156/223 (69.96%), Query Frame = 1
Query:   46 KYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            K+ +V+D+L  ERERG+TID+A  KFET KY  T++D PGHRDF+KNMITG SQAD AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P  V F+P+S FEGDN+  +S N  WYKG TL++ALD++  P++P D PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P+G++ EV
Sbjct:   45 KFRFVMDRLSEERERGVTIDLAHAKFETDKYEFTIVDCPGHRDFVKNMITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLVN--YDEEKFNALKDEVAALIKTVGYKPSDVEFIPLSAFEGDNITSKSENTPWYKGKTLVEALDDLEAPEKPVDLPLRIPIQDVYSITGVGTVPVGRVETGVLKKGENVIFEPAGVSGEV 258          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.707e-61
Identity = 118/241 (48.96%), Postives = 160/241 (66.39%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVSLL 723
            E+ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+NP+   F+  S FEGDN+ + S N  WY GPTLL+AL+ +  P+ P+D  LRLP+QDVY I GIGTVPVGR+ETGV+  G  V+F PS +  EV  +
Sbjct:   39 EQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLSRTLGIDELIVAVNKMDVVD--YDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSAFEGDNVSDHSDNTPWYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTI 270          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.707e-61
Identity = 118/241 (48.96%), Postives = 160/241 (66.39%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVSLL 723
            E+ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+NP+   F+  S FEGDN+ + S N  WY GPTLL+AL+ +  P+ P+D  LRLP+QDVY I GIGTVPVGR+ETGV+  G  V+F PS +  EV  +
Sbjct:   39 EQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLSRTLGIDELIVAVNKMDVVD--YDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSAFEGDNVSDHSDNTPWYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTI 270          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.370e-60
Identity = 118/238 (49.58%), Postives = 159/238 (66.81%), Query Frame = 1
Query:    1 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            E+ ++EA E  K  F++A+V+D L  ERERG+TIDIA  +F T  Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y ++ Y ++V+EV   L +V ++ E   F+P+S FEGDN+ E S +  WY G  LL+AL+ +  P+ P+D PLRLP+QDVY I GIGTVPVGRVETG+L  G  V+F PS ++ EV
Sbjct:   39 EQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIGELIVAVNKMDLVD--YGESEYKQVVEEVKDLLTQVRFDSENAKFIPVSAFEGDNIAEESEHTGWYDGEILLEALNELPAPEPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEV 267          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.916e-54
Identity = 107/240 (44.58%), Postives = 151/240 (62.92%), Query Frame = 1
Query:    4 RFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T  V
Sbjct:  294 KYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSRSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTV 531          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.916e-54
Identity = 104/226 (46.02%), Postives = 146/226 (64.60%), Query Frame = 1
Query:    4 RFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G
Sbjct:  292 KYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTG 515          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.502e-54
Identity = 104/226 (46.02%), Postives = 146/226 (64.60%), Query Frame = 1
Query:    4 RFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G
Sbjct:  289 KYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRSQSSDLTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTG 512          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METM61.729e-6350.84Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_PYRHO2.949e-6352.99Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB6.569e-6352.56Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_METTH6.569e-6352.47Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_HALSA4.707e-6148.96Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS34.707e-6148.96Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALMA1.370e-6049.58Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
HBS1L_PONAB1.916e-5444.58HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_MOUSE1.916e-5446.02HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_RAT2.502e-5446.02HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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