DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 85/227 (37.44%), Postives = 117/227 (51.54%), Query Frame = 1
Query:   13 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            K  A   +  F     +DK   ERERGITI  A  ++ T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D       K   D +  EV   L +  +   ++P V    +   EGD      + L       LLDA+D+ I  PKR +DKP  +P++DV+ I G GTV  GRVE G++K G  V
Sbjct:   34 KYCATQGRAQFMAYDQIDKAPEERERGITIATAHVEYSTDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYMVVFLNKVDMVD---DKELLDLVELEVRELLSEYEFPGNEIPIVKGSALKALEGD-----KSELGEPAIQQLLDAVDSYIPTPKRATDKPFLMPVEDVFSISGRGTVATGRVERGIIKVGEEV 245          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_SHIF8 (Sulfate adenylyltransferase subunit 1 OS=Shigella flexneri serotype 5b (strain 8401) GN=cysN PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 78/227 (34.36%), Postives = 125/227 (55.07%), Query Frame = 1
Query:   52 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVS 717
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++  ++  ++  N + + FVP+S  EGDN+  +S ++ WY G TLL+ L+ +   +  + +P+R P+Q V +      G  G +  GRVE      G  V   PSG+ + V+
Sbjct:   79 ALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIREDYLTFAGQLPGNLD-IRFVPLSALEGDNVASQSESMPWYSGLTLLEVLETVEIQRVVNAQPMRFPVQYVNRPNLDFRGYAGMLASGRVEV-----GQRVKVLPSGVESNVA 290          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_SHIFL (Sulfate adenylyltransferase subunit 1 OS=Shigella flexneri GN=cysN PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.133e-29
Identity = 78/227 (34.36%), Postives = 124/227 (54.63%), Query Frame = 1
Query:   52 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVS 717
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++  ++  ++  N + + FVP+S  EGDN+  +S ++ WY G TLL+ L+ +   +    +P+R P+Q V +      G  G +  GRVE      G  V   PSG+ + V+
Sbjct:   79 ALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIREDYLTFAGQLPGNLD-IRFVPLSALEGDNVASQSESMPWYSGLTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGMLASGRVEV-----GQRVKVLPSGVESNVA 290          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_COLP3 (Sulfate adenylyltransferase subunit 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=cysN PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.133e-29
Identity = 81/231 (35.06%), Postives = 119/231 (51.52%), Query Frame = 1
Query:    7 FEKEAAEMNKRSFK---------YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETG 657
            FE + A + K S K          A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K ++   NKMD     YS+ RY EI KE   + + + ++   V FVP+S   GDN+++ S N+ WY G TL+  L+ I+   +     LR  +Q V +      G  GT+  G V  G
Sbjct:   52 FEDQLAAIEKDSKKSGTTGEAIDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASTCDIAIILIDARYG-------VQTQTRRHSFICSLLGIKHIVVAVNKMDLV--DYSQERYQEIKKEYREFTESLEFS--DVRFVPLSALNGDNVVDESVNMPWYPGATLMKLLNTIDVKTQEQFTQLRFQVQYVNRPNLDFRGFAGTLASGHVLVG 271          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_PROAC (Elongation factor Tu OS=Propionibacterium acnes GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 82/210 (39.05%), Postives = 116/210 (55.24%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN--LDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            +DK   ER+RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V IS F+     E+ T   LD      L+DA+D  I +P+R  DKP  +P++DV+ I G GTV  GRVE GV+K G  V
Sbjct:   52 IDKAPEERQRGITISIAHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPAIVVALNKCDMVD---DEELIELVEMEVRELLTSQEFDGDNCPVVRISAFQALQGDEKWTQSILD------LMDAVDEYIPQPERDLDKPFLMPIEDVFTITGRGTVVTGRVERGVVKTGEEV 245          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_METI4 (Elongation factor Tu OS=Methylacidiphilum infernorum (isolate V4) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 78/206 (37.86%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +DK   E+ERGITI+ A  ++E+ K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   + +  EV   L + G+  +K+P +    +   EGD   E++          L++A+DN I  P+RP D+P  +P++DV+ I G GTV  GRVE G LK
Sbjct:   50 IDKAPEEKERGITINTAHVEYESDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLELVELEVRELLNQYGFPGDKIPIIKGSALKALEGDPEYEKNI-------LELVEAMDNYIPIPERPKDQPFLMPIEDVFNIEGRGTVVTGRVERGTLK 238          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_PSEA6 (Sulfate adenylyltransferase subunit 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=cysN PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.638e-29
Identity = 77/221 (34.84%), Postives = 121/221 (54.75%), Query Frame = 1
Query:   52 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            A ++D L +ERE+GITID+A   F T K    + D PGH  + +NM+TG S  D A++++D+      AG+    QTR H+ L   LG+K +I   NKMD    ++S+  Y+ I K+   + +++  +   + FVPIS  +GDN++ +S N  W++G TL+  L+NI      +    R P+Q V +         G V +G +K G  +T  PSG  + V
Sbjct:   76 ALLVDGLASEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMVTGASTCDLAIILVDA-----RAGVKT--QTRRHSFLVSLLGIKHVIVAINKMDLM--EFSEEVYENIKKDYLVFSEQL--DIPDIQFVPISALDGDNVVNKSENTPWFEGSTLMKTLENIEIGNDANIDDFRFPVQYVNRPNLNFRGFAGTVVSGQIKKGDKITALPSGKQSTV 285          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSNC_XYLFT (Bifunctional enzyme cysN/cysC OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=cysNC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.638e-29
Identity = 82/227 (36.12%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   49 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQ-----DVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            YA +LD L AERE+GITID+A   F+T K    V D PGH  + +NM TG S AD AV+++D+  G          QTR H+ +   LG++ ++   NKMD     Y +  ++ I  +  +   K+G N  +V  +P+S  EGDN+ +RS  + WY GP+LL+ L+ +          + LP+Q     D    G  GT+  GRV +G    G+ V   PSG  + V
Sbjct:   67 YALLLDGLAAEREQGITIDVAYRYFDTEKRKFIVADCPGHAQYTRNMATGASSADAAVVLVDARKGLLT-------QTRRHSYIVALLGIRHVVLAVNKMDLV--GYDQQTFEAIASDYLALAAKLGIN--QVQCIPLSALEGDNLCKRSARMLWYVGPSLLEYLEALEPADVDLAAAMCLPVQWVNRPDSQFRGFTGTLAAGRVRSG---DGVVVL--PSGCVSRV 277          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_FERNB (Elongation factor Tu OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 79/207 (38.16%), Postives = 112/207 (54.11%), Query Frame = 1
Query:   58 VLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM 675
            ++DK   ER RGITI+I   +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK+D           D +  EV   L K  +  +++P +  S  +         + D      LLDA+D+   +P R  DKP  +P++DV+ I G GTV  GR+E GV+KPG+
Sbjct:   49 MIDKAPEERARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKVDMVD---DPELVDLVEMEVRDLLSKYEFPGDELPVIRGSALKAVEAPNDPNHPDLKAIKELLDAMDSYFPDPVREVDKPFLMPVEDVFTITGRGTVVTGRIERGVIKPGV 245          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 76/206 (36.89%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    E+ERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LLA  +GV  ++   NK D           + + +EV   LK+ G+  +++P +  S  +     +   + +W  K   L+DA+D+ I  PKR +DK   +P++D++ I G GTV  GRVE G++K G
Sbjct:   50 IDNAPEEKERGITIATSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLARQVGVPYIVVFLNKTDMVD---DPELIELVEEEVKDLLKEYGFPGDEIPIIKGSALKALEEAKAGGDGEWSAKIMELMDAVDSYIPTPKRDTDKDFLMPIEDIFSISGRGTVVTGRVEKGIVKVG 245          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ANADF1.633e-2937.44Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
CYSN_SHIF81.633e-2934.36Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHIFL2.133e-2934.36Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_COLP32.133e-2935.06Sulfate adenylyltransferase subunit 1 OS=Colwellia... [more]
EFTU_PROAC2.785e-2939.05Elongation factor Tu OS=Propionibacterium acnes GN... [more]
EFTU_METI42.785e-2937.86Elongation factor Tu OS=Methylacidiphilum infernor... [more]
CYSN_PSEA63.638e-2934.84Sulfate adenylyltransferase subunit 1 OS=Pseudoalt... [more]
CYSNC_XYLFT3.638e-2936.12Bifunctional enzyme cysN/cysC OS=Xylella fastidios... [more]
EFTU_FERNB6.205e-2938.16Elongation factor Tu OS=Fervidobacterium nodosum (... [more]
EFTU_CAMHC6.205e-2936.89Elongation factor Tu OS=Campylobacter hominis (str... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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