DC900195

Overview
NameDC900195
Unique NameDC900195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 78/208 (37.50%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL--DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKP 669
            +D    E+ERGITI+++  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P +P+S     EGD          W K    L A   DN+ EP+R  DKP  +P++DV+ I G GTV  GRVE GVL P
Sbjct:   52 VDNAPEEKERGITINVSHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSDMVD---DEELLELVEFEVRDLLSSQDFDGDNAPVIPVSALKALEGDE--------KWVKSVQDLMAAVDDNVPEPERDVDKPFLMPVEDVFTITGRGTVVTGRVERGVLLP 241          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 88/240 (36.67%), Postives = 120/240 (50.00%), Query Frame = 1
Query:   13 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVT---FGPSGLTTEVS 717
            K  A   K  F     +DK   ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D           + +  EV   L K GY  ++VP V  S  +      +  N   Y+    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G  V    F P    T V+
Sbjct:   34 KVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVDMVD---DPELIELVEMEVRELLSKYGYPGDEVPIVKGSALKALESTSQDPNAPEYQCILELMDAVDKYIPTPQRDIDKPFLMPIEDVFSITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVT 263          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_SHEWM (Sulfate adenylyltransferase subunit 1 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=cysN PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 79/223 (35.43%), Postives = 119/223 (53.36%), Query Frame = 1
Query:   10 EKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETG 657
            EK++   N    SF  A ++D L++ERE+GITID+A   F T +    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMDA    Y +A Y +I KE   + + + ++   V FVPIS  +GDN++  S N+ WY G TLL  L+ ++  +  S+   R  +Q V +      G  GT+  G +  G
Sbjct:   60 EKDSKRFNTTDDSFDLALLVDGLQSEREQGITIDVAYRYFTTEQRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARHG-------VQVQTRRHSFICSQLGIKHVIIAINKMDAI--DYDQATYQKIKKEYREFAEDLSFS--DVRFVPISALKGDNVVNESPNMTWYPGSTLLKLLNTVSVEQDRSES-FRFQVQYVNRPNLDFRGFCGTIGSGEIRVG 270          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 83/229 (36.24%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   13 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEG--DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXV 681
            K  AE     F     +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   L    +  + +P V    ++  EG  DN+ + S N        L+ A+D  I +P RP+DKP  +P++DV+ I G GTV  GR+ETG++K G  V
Sbjct:   34 KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVDQVD---DEEILELVELEVRELLSSYDFPGDDIPIVKGSALAALEGRDDNIGKDSIN-------ALMAAVDAYIPQPPRPTDKPFLMPVEDVFSISGRGTVVTGRIETGIIKVGEEV 245          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_BEUC1 (Elongation factor Tu OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 79/206 (38.35%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +DK   E++RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G++ +  P + +SG    EGD         +W K    L+DA+D ++ EP R  DKP  +P++DV+ I G GTV  G+VE G L
Sbjct:   52 IDKAPEEKQRGITINIAHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPYLLVALNKSDMVD---DEEILELVEMEVRELLSSQGFDGDDAPVIRVSGLKALEGDP--------EWVKTVEELMDAVDESVPEPVRDMDKPFLMPIEDVFTITGRGTVVTGKVERGKL 239          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_VIBSL (Sulfate adenylyltransferase subunit 1 OS=Vibrio splendidus (strain LGP32) GN=cysN PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 80/227 (35.24%), Postives = 122/227 (53.74%), Query Frame = 1
Query:   52 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEVS 717
            A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D AV++ID+  G  +       QTR H+ ++  LG+K  I   NKMD     YS+ R++EI  +   + + +      +  +P+S  EG N+   S  L W++GP+LL+ L+N++  ++ S    R P+Q V +      G  GTV  GRV       G  +   PSG T++V+
Sbjct:   78 ALLVDGLQAEREQGITIDVAYRYFSTQKRKFIIADTPGHEQYTRNMATGASTCDLAVILIDARKGVLD-------QTRRHSFISNLLGLKHFIVAVNKMDLV--DYSQDRFEEIRDQYLEFAENL-EGETNIQILPVSALEGINVAAPSKELAWFEGPSLLEVLENVDIDQKRSAGEFRFPVQYVNRPNLDFRGFAGTVASGRVSV-----GDEIKALPSGKTSKVA 289          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: CYSN_ARCB4 (Sulfate adenylyltransferase subunit 1 OS=Arcobacter butzleri (strain RM4018) GN=cysN PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 79/245 (32.24%), Postives = 127/245 (51.84%), Query Frame = 1
Query:    7 FEKEAAEMNKRS---------FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMXVTFGPSGLTTEV 714
            FE + A + K S         F  A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S AD A+++ID+  G          QTR H+ +   LG+K ++   NKMD     + +  +++I  +   + +++G   + +  +PIS   GDN+++RS    WYKG TL++ L+ I   +       R P+Q V +         G + +GV+K G  +T  PSG ++ V
Sbjct:   52 FEDQLAAIKKDSKKVGTTEGEFDLALLVDGLQSEREQGITIDVAYRYFTTDKRKFIIADTPGHEQYTRNMATGASTADLAIILIDARYG-------VQTQTRRHSFITKLLGIKHIVVAVNKMDLV--DFKEDIFNQISSDYLKFAQELGMTKD-ITLIPISALNGDNIVKRSEKSPWYKGDTLMNLLETIKIDEDRDLVHFRFPVQYVNRPNLNFRGFCGTIASGVIKVGDAITVLPSGKSSTV 286          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_TROWT (Elongation factor Tu OS=Tropheryma whipplei (strain Twist) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.058e-28
Identity = 81/210 (38.57%), Postives = 114/210 (54.29%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFE--------GDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 663
            +D    ER+RGITI+I+  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D      S     E+V+ EV   L   G++ E VP V +SG +        GD ++E    +D           ++I +P R  DKP  +P++DV+ I G GTV  GR E GVL
Sbjct:   53 IDSAPEERQRGITINISHIEYETEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGAM-------AQTREHVLLAKQVGVPYLLVALNKADMV----SDEEILELVELEVRELLSNHGFDGENVPVVRVSGLKALEGDQKWGDAVMELMKAVD-----------ESIPDPVRDRDKPFLMPIEDVFTITGRGTVVTGRAERGVL 240          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_STRSV (Elongation factor Tu OS=Streptococcus sanguinis (strain SK36) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.058e-28
Identity = 78/206 (37.86%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 666
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            L+D +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K
Sbjct:   53 IDAAPEERERGITINTAHVEYETAKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDII-------MELMDTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVK 241          
BLAST of DC900195 vs. ExPASy Swiss-Prot
Match: EFTU_RICSI (Elongation factor Tu OS=Rickettsia sibirica GN=tuf PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.058e-28
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1
Query:   61 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 672
            +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DKP  +P++DV+ I G GTV  GRVE+G++K G
Sbjct:   50 IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVG 240          
The following BLAST results are available for this feature:
BLAST of DC900195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BRELN6.205e-2937.50Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_ANATD6.205e-2936.67Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
CYSN_SHEWM6.205e-2935.43Sulfate adenylyltransferase subunit 1 OS=Shewanell... [more]
EFTU_NOVAD8.104e-2936.24Elongation factor Tu OS=Novosphingobium aromaticiv... [more]
EFTU_BEUC18.104e-2938.35Elongation factor Tu OS=Beutenbergia cavernae (str... [more]
CYSN_VIBSL8.104e-2935.24Sulfate adenylyltransferase subunit 1 OS=Vibrio sp... [more]
CYSN_ARCB48.104e-2932.24Sulfate adenylyltransferase subunit 1 OS=Arcobacte... [more]
EFTU_TROWT1.058e-2838.57Elongation factor Tu OS=Tropheryma whipplei (strai... [more]
EFTU_STRSV1.058e-2837.86Elongation factor Tu OS=Streptococcus sanguinis (s... [more]
EFTU_RICSI1.058e-2836.54Elongation factor Tu OS=Rickettsia sibirica GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionDC900195 VSS Citrus sinensis cDNA clone VS28233 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900195 ID=DC900195; Name=DC900195; organism=Citrus sinensis; type=EST; length=770bp
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATA
TCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAG
GACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGA
GACCGGTGTCCTCAAGCCTGGTATGGNGGTGACATTTGGCCCCTCTGGAT
TGACAACTGAGGTAAGTCTGTTGAGATGCACCACGAGCTNTGCAGGAGGC
CTTCCGGTGACATGTTGGCT
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