DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 4.947e-21
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG KF DENF  K    G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +  V  +  +  K  VI +CG+L
Sbjct:   96 ESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 6.461e-21
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG KF DENF  K    G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +  V  +  +  K  VI +CG+L
Sbjct:   96 ESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.438e-21
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = -2
Query:  285 SIYGS-KFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 548
            +IYG+ +F DENF+ K   PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ I    ++  + N+ V I  CG++
Sbjct:   93 TIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.438e-21
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKP---VVIXDCGQLS 551
            +SIYGS+F DENF      PG+LSMANAGP +NGSQFF+ T KT WLDG HVVFG+V+ G D+VK I K  + +   +KP   V I   GQLS
Sbjct:   99 KSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISK--AETDNRDKPLEDVKIIKSGQLS 189          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.438e-21
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  291 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCG 551
            +SIYG KFADENF  K   P +LSMANAGP TNGSQFF+      WLDGKHVVFG+VV+G D ++   K  S  G+    + I D G
Sbjct:   74 KSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.102e-20
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = -2
Query:  285 SIYGS-KFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 548
            +IYG+ KFADENFV K    G+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQVV+GMD+V+ I    +   + ++ V+I  CG++
Sbjct:   93 TIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.102e-20
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSS-SGRTNKPVVIXDCGQL 551
            +SIYG+KF DENF  +    G+LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I  V      R  K V I  CG+L
Sbjct:  107 KSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.439e-20
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSG-RTNKPVVIXDCGQLS 551
            ESIYG+KF DE F  K   P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ I  + + SG R  K  +I DCG+L+
Sbjct:   90 ESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELT 180          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 100.908 bits (250), Expect = 1.439e-20
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG KF DENF  K    G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++GM V K +  V     +  K  VI +CG+L
Sbjct:   96 ESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.439e-20
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVG-SSSGRTNKPVVIXDCGQL 551
            ESIYG KF DENF  K    G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVFG+V +GM VV++I  V        ++ VVI DCG++
Sbjct:   84 ESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPID_MOUSE4.947e-2156.1840 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_RAT6.461e-2156.1840 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIH_ASPOR8.438e-2153.93Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIB_SCHPO8.438e-2156.99Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIA_PARPR8.438e-2155.17Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPIH_ASPFU1.102e-2053.93Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIB_ARTBE1.102e-2057.78Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPID_GIBZE1.439e-2057.14Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPID_BOVIN1.439e-2057.3040 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
CYP40_ARATH1.439e-2056.67Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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