DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.880e-20
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  291 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCG 551
            ESIYG KF DENF  K   P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V++G   V+ I  + + +     PVVI +CG
Sbjct:   79 ESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.455e-20
Identity = 52/104 (50.00%), Postives = 61/104 (58.65%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            +CQ           G+SIYG KF DENF  K  GPG+LSMAN G  TN SQF +   K E LD KHVVFG V +GMD VK I   GS  G   + + I +CGQ+
Sbjct: 3121 VCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.455e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  282 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 551
            ESIYG KF DENF  K   P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V+    +V+ I  + ++S R ++ V I   G LS
Sbjct:   82 ESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVLS 171          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.206e-20
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV-EGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 548
            SIYG +F DENF  K    G++SMANAGP TNGSQFF+ T KTEWLDG+HVVFG++  +    V+AI  +GSS GR +K   I D G L
Sbjct:   91 SIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.188e-20
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNK---PVVIXDCGQL 548
            SIY   FADENF  +   PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ I  V   +G  NK   PVVI  CG++
Sbjct:   89 SIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.188e-20
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKP---VVIXDCGQL 548
            SIYG++F DENF  K  GPG+LSMAN+GP TNG QFF+ TA  E+LDGKH VFG+V++G+  V+ I  V   +G  N+P   V I +CG++
Sbjct:   91 SIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.188e-20
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNK---PVVIXDCGQL 548
            SIY   FADENF  +   PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ I  V   +G  NK   PVVI  CG++
Sbjct:   89 SIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.469e-20
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           GESIYG KF DENF  K   P +LSMANAGP TNGSQ F+  A T  LDGKHVVFG+V++G  VV+AI +  +++ R    V I  CG L
Sbjct:   71 MCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 7.143e-20
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPV---VIXDCGQL 551
            ESIYG KF DENF      P +LSMAN+GP TNGSQFF+ T  T  LDGKHVVFG+V+EG  +V+ + +  S  G  ++PV    I DCG+L
Sbjct:   87 ESIYGEKFEDENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLER--SEKGANDRPVEDWKIADCGEL 176          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.329e-20
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = -2
Query:  309 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPV 551
            +SIYG+KF DENF  +    G+LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I  V    GR ++P+
Sbjct:  106 KSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNV--PKGRNDRPL 184          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPID_SCHPO1.880e-2056.3240 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
RBP2_HUMAN2.455e-2050.00E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPID_CRYNE2.455e-2055.56Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIA_NEOCA3.206e-2057.30Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPIH_HUMAN4.188e-2052.75Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_CRYNE4.188e-2053.85Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIH_BOVIN4.188e-2052.75Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPID_ASHGO5.469e-2051.92Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPID_CANAL7.143e-2054.35Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
PPIB_EMENI9.329e-2059.26Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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