DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.945e-17
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -2
Query:  285 GSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSS-SGRTNKPVVIXDCGQL 539
            G +FADENF+ K  G G+LSMAN+GP +NG QFF+     ++LDGKHVVFG++V+G+  ++ I  V +  + R   PV I +CGQ+
Sbjct:   93 GDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.945e-17
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  288 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTA-KTEWLDGKHVVFGQVVEGMDVVKAIXKVG-SSSGRTNKPVVIXDCGQ 551
            +SIYG  F DENF  K    G LSMAN G  TNGSQFF+ T  +  WLDGKHVVFGQVV+GMDVV  I  V   ++ +  + V I  CG+
Sbjct:  109 KSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAKCGE 198          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.541e-17
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  285 SIYGSK-FADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXK--VGSSSGRTNKPVVIXDCGQL 548
            +I+ S+ F DENF  K   PG+LSMANAG  +NG QFF+ T   ++LDGKHVVFG+V+EG D+VK I    VG++S R    V I +CG++
Sbjct:   84 TIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS-RPKSNVAIVECGEM 173          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.541e-17
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  351 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI 548
            SIYG  F DENF  K  G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +I
Sbjct:  111 SIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSI 176          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.541e-17
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  351 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI 548
            SIYG  F DENF  K  G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +I
Sbjct:  111 SIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSI 176          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.392e-17
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = -2
Query:  351 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI 548
            SIY   FADENF  +   PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ I
Sbjct:   89 SIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKI 154          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.392e-17
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGS-SSGRTNKPVVIXDCGQL 548
            SIYG  F DE    +   PG L MAN GP TNG QF+V T   +WL+GKH VFG+V+EGMD V AI  V + +      PV+I +CG++
Sbjct:  100 SIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGEM 188          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.392e-17
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = -2
Query:  285 SIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVV---IXDCGQL 548
            SIYG  F DEN   K   P +LSMAN GP TNGSQFF+ + +   LDGKH VFG+V++G++VVKAI  +   +G  +KPV    I  CG++
Sbjct:   88 SIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENL--ETGNEDKPVCKVEITHCGEM 176          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.261e-16
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = -2
Query:  342 SIYGSKFADE-NFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKV 548
            SIYG +FADE N   +  G GILSMANAGP TNGSQFF+  A T WLDGKH +FG+V +GM+VVK +  V
Sbjct:   69 SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVKRMGLV 138          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.809e-16
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  285 SIYGSKFADEN--FVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGR-TNKPVVIXDCGQL 548
            SIYG  F DE+     +   PG L MAN GP TNG QF+V T   +WLDGKH VFG+V+EGMD + AI  V + +     +PVVI +CG++
Sbjct:  101 SIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEI 191          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPIH_RHIOR1.945e-1748.84Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
CYPB_YEAST1.945e-1754.44Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPIH_SCHPO2.541e-1751.65Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPIC_MOUSE2.541e-1765.15Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN2.541e-1765.15Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIH_MOUSE7.392e-1757.58Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
CYPR_CALVI7.392e-1749.44Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYP8_CAEEL7.392e-1750.55Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIL1_RHIOR1.261e-1662.86Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
CYPR_DROME2.809e-1649.45Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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