DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.588e-27
Identity = 64/104 (61.54%), Postives = 73/104 (70.19%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           G+SIYGSKF DENF  K   P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V  G DVVK +  VGSSSG+T++ V+I DCGQL
Sbjct:   59 MCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.588e-27
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSG-RTNKPVVIXDCGQL 551
            +S+YG  F DENF     GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVFGQV+EGM+VVK I +  +  G R  K VVI DCGQL
Sbjct:  165 KSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.074e-27
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            +SIYG+KFADENFV +   PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+VK I   GS SG T+K +VI + GQL
Sbjct:   74 KSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.708e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  288 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQ 596
            MCQ           G+SIYG KF DENF+ K  GPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG++ +G+DV++ I   GS  G+  + V+I DCG+
Sbjct:  197 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.619e-27
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            +SIYG+KF DENF  K  GPG LSMANAGP TNGSQFF+ T K  WLDGKHVVFG+V EGMDVV+ I  +GS +G     ++I +CGQL
Sbjct:   76 KSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.619e-27
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  288 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQ 596
            MCQ            +SIYG KF DEN + K  G GILSMANAGP TNGSQFF+C AKTEWLDGKHV FG+V E +++V+A+   G  + +T+K + I DCGQ
Sbjct:   61 MCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.619e-27
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = -2
Query:  291 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCG 551
            +SIYG KF DENF  K   PG+LSMANAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVVK +  +GS+SG T   +VI  CG
Sbjct:   74 KSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.293e-26
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            +SIYGSKFADENFV K    G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAI   G++SG+    +VI + G+L
Sbjct:   94 KSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.107e-26
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG KFADENF  K   PG+LSMANAGP TNGSQFF+      WLDGKHVVFG+VVEG+++++ +   GS SG+T + +VI DCG++
Sbjct:   82 ESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.107e-26
Identity = 59/90 (65.56%), Postives = 67/90 (74.44%), Query Frame = -2
Query:  285 ESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIXKVGSSSGRTNKPVVIXDCGQL 551
            ESIYG KF DENF  K    G+LSMANAGP TNGSQFF+   KT WLDGKHVVFG+V+EG D VVKA+ K GS SG+T+  + I DCG L
Sbjct:   74 ESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PPIA_ECHGR1.588e-2761.54Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
CP20B_ARATH1.588e-2765.56Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIA_CANAL2.074e-2764.04Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPIE_BOVIN2.708e-2754.37Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIA1_RHIOR4.619e-2764.04Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PAL4B_HUMAN4.619e-2755.34Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CYPH_SCHPO4.619e-2765.52Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CYPC_YEAST2.293e-2662.92Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPI2_SYNY35.107e-2660.67Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CYPH_UROFA5.107e-2665.56Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193; Name=DC900193; organism=Citrus sinensis; type=EST; length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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