CX043311

Overview
NameCX043311
Unique NameCX043311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.122e-42
Identity = 98/264 (37.12%), Postives = 159/264 (60.23%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLS-GDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN-----------ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRY---GAKDFVTSKDSSLLAPGTYYLTEVD 746
            FYKP+L+SEYP VDGKLS  CYL ALD CY     K+E + +  +FS+ + DY  FHSPYN+LVQKS+ARL++NDF++N ++      + L PF  LS G +SY +  L++++ +L+   +  KV PSTL+ K+ GN Y           + N  ++L+ K+V++FSYGSGL A++FS +++  ++  + +N           I  + N+  +L +R +  PE F  ++ + E  +   GA+  + + D   ++ GT+YL ++D
Sbjct:  194 FYKPDLSSEYPYVDGKLSIECYLRALDKCYLEYKKKFESINDDNKFSMDSFDYVCFHSPYNRLVQKSYARLIYNDFLQNPNN---PKYQDLLPFKDLSTGKDSYINSKLDQITLKLSLDDFKTKVNPSTLLSKECGNSYCGSVYSGILSLLSNV-NDLNNKKVLVFSYGSGLAASLFSFRINNNKNRNNNNNNNNCFFKTTNDIGKISNIKERLSNRVKVSPEEFTRILDIREKSHQMVGARTPIDTLD--YISAGTFYLEKID 451          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.182e-41
Identity = 97/259 (37.45%), Postives = 141/259 (54.44%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ------FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752
            FYKP++ SEYP+VDGKLS  CYL ALD CY     K EK + KQ      F+L +  Y +FH+P+ KLVQKS ARL+FNDF+  +        + L  F  L  +++Y ++D++K   + +  +++ K + S  +    GNMYT          + H+   +L G R+  FSYGSGL A+ FS ++S+   P S     + S  ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +
Sbjct:  241 FYKPDVTSEYPLVDGKLSIQCYLRALDKCYAFYRQKIEK-QWKQAGIDRPFTLDDVQYMIFHTPFCKLVQKSLARLMFNDFLLASGDTQTGIYKGLEAFRGLKLEDTYTNKDVDKAFLKASLNMFNKKTKNSLYLSTYNGNMYTSSLYGCLASLLAHHSAQDLAGSRIGAFSYGSGLAASFFSFRVSQDASPGSPLEKLVSSTSDLQKRLASRKRVSPEEFTEIMNQREQYYHKMNFSPPGDKNSLFPGTWYLERVDEL 498          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_MOUSE (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.155e-40
Identity = 100/257 (38.91%), Postives = 148/257 (57.59%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEGKQ--FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746
            FYKP++ SEYPVVDGKLS  CYL ALD CY    K + ++++K EGK   F+L++  + +FHSPY KLVQKS AR+  NDF+ + +    +    L  F  +  +++Y  RD+EK   + +  L++ K + S L+  Q GNMYT          +      +L GKRV +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD
Sbjct:  204 FYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGKDKDFTLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRVGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDTHHLANYIPQCSIDSLFEGTWYLVRVD 459          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_RAT (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.969e-40
Identity = 99/257 (38.52%), Postives = 148/257 (57.59%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEGKQ--FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746
            FYKP++ SEYPVVDGKLS  CYL ALD CY    K + ++++K EGK   F+L++  + +FHSPY KLVQKS AR+  NDF+ + +    +    L  F  +  +++Y  RD+EK   + +  L++ K + S L+  Q GNMYT          +      +L GKR+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD
Sbjct:  204 FYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGKDKDFTLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASAELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLREDTHHLANYIPQCSIDSLFEGTWYLVRVD 459          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_CRIGR (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Cricetulus griseus GN=HMGCS1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.274e-39
Identity = 96/257 (37.35%), Postives = 145/257 (56.42%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCY----KCLCSKYEKLEGKQ--FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746
            FYKP++ SEYP+VDGKLS  CYL ALD CY    K + ++++K EG    F+L++  + + HSPY KLVQKS AR+  NDF+ + +    +    L  F  +  +++Y  RD+EK   + +  L++ K + S L+  Q GNMYT          +      +L GKR+ +FSYGSGL AT++SLK+++   P S  +    S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD
Sbjct:  204 FYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIRAQWQK-EGNDNDFTLNDFGFMISHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKVTASLCDLKSRLDSRTCVAPDVFAENMKLREDTHHLANYIPQCSIDSLFEGTWYLVRVD 459          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_CHICK (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.476e-37
Identity = 96/258 (37.21%), Postives = 145/258 (56.20%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFM--RNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSE-LDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746
            FYKP++ SEYPVVDGKLS  CYL ALD CY    +K     + EG  + F+L++  + +FHSPY KLVQKS ARLL NDF+  +NA + +      L  F  +  +++Y  RD+EK   + +  L++ K + S L+  Q GNMYT          +     E L G+R+  FSYGSG  AT++S+++++   P S  + +  S+ ++  +L SR    P+ F E MK+ +  +   +++       L  GT+YL  VD
Sbjct:  204 FYKPDMVSEYPVVDGKLSIQCYLSALDRCYSVYRNKIHAQWQKEGTDRGFTLNDFGFMIFHSPYCKLVQKSVARLLLNDFLSDQNAETAN-GVFSGLEAFRDVKLEDTYFDRDVEKAFMKASAELFNQKTKASLLVSNQNGNMYTPSVYGCLASLLAQYSPEHLAGQRISEFSYGSGFAATLYSIRVTQDATPGSALDKITASLSDLKARLDSRKCIAPDVFAENMKIRQETHHLANYIPQCSVEDLFEGTWYLVRVD 460          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS_YEAST (Hydroxymethylglutaryl-CoA synthase OS=Saccharomyces cerevisiae GN=ERG13 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.136e-34
Identity = 93/257 (36.19%), Postives = 128/257 (49.81%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSK------YEKLEGKQF--SLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHS-ELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746
            FYKP+  SEYP VDG  S TCY+ ALD  YK    K           G      L   DY VFH P  KLV KS+ RLL+NDF  N     E   E     +T   DES   +++EK    +AKP +  +V  S ++P   GNMYT          ++   S +L GKRV LFSYGSGL A+++S K+        + +I+  +++  KL  R    P+++   ++L E+ +  K+F        L  G YYLT +D
Sbjct:  233 FYKPDFTSEYPYVDGHFSLTCYVKALDQVYKSYSKKAISKGLVSDPAGSDALNVLKYFDYNVFHVPTCKLVTKSYGRLLYNDFRANPQLFPEVDAE----LATRDYDESLTDKNIEKTFVNVAKPFHKERVAQSLIVPTNTGNMYTASVYAAFASLLNYVGSDDLQGKRVGLFSYGSGLAASLYSCKIVG-----DVQHIIKELDITNKLAKRITETPKDYEAAIELRENAHLKKNFKPQGSIEHLQSGVYYLTNID 480          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS_SCHPO (Hydroxymethylglutaryl-CoA synthase OS=Schizosaccharomyces pombe GN=hcs1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 92/254 (36.22%), Postives = 122/254 (48.03%), Query Frame = 3
Query:    3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ--FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVD-EATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752
            FYKP+L SEYP VDG  S  CY+ ALD  Y     +     GK     L   DY +FH+P  K VQK++ARLL+ D     S+ + E  +E L   STL   +S   + LEK    + K  ++ +V PS   P   GNMYT          +      EL GKRV  +SYGSGL A+ FS  +        +S I    N+   L +RH   P  + E ++L    +  K+F        L  GTYYLT +D M
Sbjct:  193 FYKPDLTSEYPYVDGHFSLECYVKALDGAYANYNVRDVAKNGKSQGLGLDRFDYCIFHAPTCKQVQKAYARLLYTDSAAEPSNPELEGVRELL---STLDAKKSLTDKALEKGLMAITKERFNKRVSPSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKRVGAYSYGSGLAASFFSFVVKG-----DVSEIAKKTNLVNDLDNRHCLTPTQYEEAIELRHQAHLKKNFTPKGSIERLRSGTYYLTGIDDM 438          
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS_CAEEL (Hydroxymethylglutaryl-CoA synthase OS=Caenorhabditis elegans GN=F25B4.6 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 71/254 (27.95%), Postives = 117/254 (46.06%), Query Frame = 3
Query:    3 FYKP--NLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDF-MRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSV-MNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752
            F+KP   + SEYPVVDG LS + YL A+   Y    SK  +       L++ D    HSP+ K+VQK  A + + D  +R+          KL        DE+ ++   + +  +L+  ++  K  P  +  +++GNMYT          +         K ++ F+YGSGL + +F  ++   R   +L  I  V +    +L  R +F PE F E ++  E    +K+   S   + L P TY+L  +D +
Sbjct:  200 FFKPITPIPSEYPVVDGSLSLSSYLEAVRMTYTYFISKVNRHTTGIDGLNSFDGVFLHSPFTKMVQKGLAVMNYTDSQLRHKQLNGNGVDHKL--------DENDRAGLAKMI--ELSAQVWKEKTDPYLVFNRRIGNMYTPSLFAQLLAYLAADDCVTGEKSILFFAYGSGLASAIFPGRV---RQTSNLDKIRQVAIRAIKRLDDRIQFTPEEFTETLQKREVFLRSKEIPKSPSETSLFPNTYFLDNMDKL 440          
The following BLAST results are available for this feature:
BLAST of CX043311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCSB_DICDI6.122e-4237.12Hydroxymethylglutaryl-CoA synthase B OS=Dictyostel... [more]
HMCS2_BOVIN5.182e-4137.45Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS1_MOUSE1.155e-4038.91Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_RAT1.969e-4038.52Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_CRIGR8.274e-3937.35Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_CHICK3.476e-3737.21Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS_YEAST6.136e-3436.19Hydroxymethylglutaryl-CoA synthase OS=Saccharomyce... [more]
HMCS_SCHPO1.511e-3236.22Hydroxymethylglutaryl-CoA synthase OS=Schizosaccha... [more]
HMCS_CAEEL2.119e-1827.95Hydroxymethylglutaryl-CoA synthase OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10C01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C01-F2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043311 ID=CX043311; Name=CX043311; organism=Citrus sinensis; type=EST; length=753bp
ATTTCTACAAGCCAAACCTTGCTAGTGAATATCCGGTTGTTGATGGGAAA
CTTTCTCAGACATGCTACCTCATGGCTCTTGATACTTGTTACAAATGTTT
ATGCAGCAAGTACGAGAAACTGGAGGGAAAACAATTTTCTCTTTCTAATG
CTGATTATTTCGTGTTCCATTCTCCATATAACAAGCTTGTACAGAAAAGC
TTTGCTCGTTTGTTATTCAATGACTTTATGAGGAATGCCAGTTCTGTCGA
CGAGGCTACCAAAGAAAAGCTGGGACCATTTTCAACCTTGTCTGGTGATG
AAAGCTACCAAAGCCGGGATCTTGAGAAGGTTTCCCAACAACTTGCAAAG
CCCCTTTATGACGCAAAGGTCCAACCATCCACTTTAATACCGAAGCAAGT
TGGTAACATGTACACAGCATCTCTGTATGCAGCATTGGCTTCCCTTATTC
ACAACAAACACAGTGAATTGGATGGCAAGCGAGTGGTTTTGTTCTCGTAT
GGAAGTGGTTTGACTGCAACGATGTTCTCATTGAAACTCAGTGAAGGTCG
TCATCCCTTCAGCTTGTCAAACATCCTATCTGTTATGAATGTTGCAGGGA
AGTTGAAATCAAGGCATGAGTTTCCCCCAGAGAATTTTGTGGAAGTCATG
AAGCTAATGGAGCATAGATATGGAGCCAAAGACTTTGTAACAAGCAAAGA
CAGTAGCCTTTTGGCTCCAGGAACATACTATCTCACTGAAGTTGACTCCA
TGT
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