CX043307

Overview
NameCX043307
Unique NameCX043307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.043e-21
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  232 SGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 579
            S         CAACK  RR+CA DC+ APYFP D  ++F N HK+FG SN+ K+++ L   ++  A+ +++++++AR  DPV GC G I  LQ QI+  + +L +   ++   R R
Sbjct:   27 SSNNNSTNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDR 142          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD27_ARATH (LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  241 KQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 561
            K G    CAACK  RRRCA DC  APYFPA++P+ F NVH++FG  ++ K+L++L   Q+ +A+ S+++++  R R PV+GC+G    LQ  I   + +L    +++
Sbjct:   30 KGGTSGACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQL 136          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD7_ARATH (LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  247 GAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 561
            G+ + CAACK  R++C ++C+ A YFP D   KF N HK+FG SN+ KML+ +   QR  A+ +++Y ANAR  DPV G    I  L+ +I+ +QT+L L + ++
Sbjct:    9 GSTTACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMENLIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQI 113          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD35_ARATH (LOB domain-containing protein 35 OS=Arabidopsis thaliana GN=LBD35 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  262 CAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 561
            C+ACK+++  CA +C+FAP+FP    + F  +H++FGA NV K+L  L   QR  AV+++ YEA A  RDP++GCVG  +  +NQ+  L  Q+  A+ E+
Sbjct:    6 CSACKVMKCDCAPNCIFAPHFPLTNLETFERLHRIFGAGNVFKILANLDPIQRETAVNALCYEAEALERDPIFGCVGIFNHYKNQLQNLDEQINSAKNEL 105          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD2_ARATH (LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  262 CAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVG 492
            CA+CK  R++C  +C+ +PYFPA + ++F  VHKVFG SNV KM++ +    R     S+ +EA  R +DPV G  G
Sbjct:   25 CASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYG 101          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD9_ARATH (LOB domain-containing protein 9 OS=Arabidopsis thaliana GN=LBD9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.601e-13
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAV-SSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQL 540
            +PCA C    +RC + C FAPYFPA+   ++ N HK+FG SN+ KM++     ++ D + SS++ E +A  +DP  G  G I  L+ QI++ +  L
Sbjct:   11 APCALCTTKNKRCPKKCDFAPYFPAERKGEYENAHKLFGTSNIIKMMRFASKDKQRDMLASSILMEGDAWKKDPARGGFGMIQKLKWQIELRKIYL 106          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD34_ARATH (LOB domain-containing protein 34 OS=Arabidopsis thaliana GN=LBD34 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  247 GAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQEL---PVHQRGDAVSSMVYEANARVRDP 474
            G  + CAAC+  RRRC  DC F PYFPA+  Q+F N H++   + + K L+EL   P  QR +A+SS++YE+N R + P
Sbjct:   13 GYVNQCAACRHQRRRCTPDCFFRPYFPAERHQEFQNFHRLHSNTRLQKKLKELGLSPEEQR-EAMSSIIYESNIRSQFP 90          
The following BLAST results are available for this feature:
BLAST of CX043307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LBD22_ARATH5.043e-2138.79LOB domain-containing protein 22 OS=Arabidopsis th... [more]
LBD27_ARATH1.123e-2041.12LOB domain-containing protein 27 OS=Arabidopsis th... [more]
LBD7_ARATH1.916e-2042.86LOB domain-containing protein 7 OS=Arabidopsis tha... [more]
LBD35_ARATH2.767e-1943.00LOB domain-containing protein 35 OS=Arabidopsis th... [more]
LBD2_ARATH3.870e-1344.16LOB domain-containing protein 2 OS=Arabidopsis tha... [more]
LBD9_ARATH6.601e-1338.54LOB domain-containing protein 9 OS=Arabidopsis tha... [more]
LBD34_ARATH3.276e-1245.57LOB domain-containing protein 34 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B11-D22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043307 ID=CX043307; Name=CX043307; organism=Citrus sinensis; type=EST; length=798bp
CTCTTTTGCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCCTCTTT
ACTGTATCTTTCAACTCTCTTTTGCGTTTAATTAAGCTTCCAAATCTAAA
CATATGCTATAACCCTAAAAATTCCTTTTGGCTTTTATTTTAAGGGAAAG
TGCCCTAGGTGGTGCCTTAAATTCTTAACAGGGTAGATACTTAGTGGGGT
TTAGGGGGGGACACGTGGCAGGATGAAGGAGAGTGGTAGGAAACAAGGTG
CACCATCACCATGTGCAGCATGCAAGCTTCTAAGGAGAAGGTGTGCCCAG
GATTGCGTTTTTGCCCCTTATTTTCCAGCTGATGAGCCTCAGAAATTTGC
TAATGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGG
AATTGCCAGTGCACCAAAGAGGAGATGCTGTGAGCAGCATGGTGTATGAA
GCGAACGCAAGAGTTCGTGATCCAGTGTACGGTTGCGTTGGAGCCATTTC
GTCTCTGCAAAATCAAATAGACGTGCTACAGACCCAATTGGCCCTGGCTC
AAGCCGAGGTGGTGCACTTACGGGTTCGCCAAACTGCGTCCTTGTCGAGC
CACGGGTTCGGCCCGGCTAGCCCAAGCAACAGCGGCTCTCCCTCGTCCAA
GCTCGTGGCTTCTCAGACCAAGCCCATCTACGACATGGACTTGGCTCATT
ATGAGGAATCAATGTGGACTTGTTAGCTAGCCACTCTCATATTTTATAAA
CGCATTTTATATATCTAGATATATTTAGAGTTTTCTTTTTCTTTTTTT
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