CX043294

Overview
NameCX043294
Unique NameCX043294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:5..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.506e-66
Identity = 124/241 (51.45%), Postives = 156/241 (64.73%), Query Frame = 1
Query:   28 VILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDP--QWCL-RGSIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYT 717
            ++LC   L+   ++     WI A ATFY              YGNLY QGYG   AALSTALFN+G +CG C+ I+C  D   +WC  RG++ VTATN CPP        GGWC+PP  HFD+SQP ++ I  YRAGIVPV+YRRVRC R GG+RFT+ G  +F LVL+ NV G+G V AVS++G+ T W  MSRNWG NWQS + L GQ LSF VTT+ G  ++  +VAP  W FGQT++
Sbjct:    9 LVLCT-ILAARMALAAADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.174e-65
Identity = 124/248 (50.00%), Postives = 158/248 (63.71%), Query Frame = 1
Query:   16 MALWVILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRGSII-VTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGRQ 726
            M+  + LC+  ++  ++      W  A ATFY              YGNLY QGYG + AALS ALFN+G SCG C+ I+C  +  PQWC  G+ + VTATN CPP        GGWC+PP  HFD+SQP ++ I  Y+AGIVPV+Y+RVRC R GG+RFT+ G +YF LVLITNV G+G V +  IKG+ T W  MSRNWG NWQS + L GQ+LSF VTT+ G  +   +VAP  W FGQT++  Q
Sbjct:    5 MSSRLALCLAVVAACAAGGAVADWSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFSTYQ 252          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.841e-64
Identity = 117/223 (52.47%), Postives = 149/223 (66.82%), Query Frame = 1
Query:   76 YGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPG------GWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSF-GQTYTGR 723
            + GW +  ATFY              YG+L+ QGYG  TAALSTALFNNG  CGAC++IMC + PQWCL GSI +TATNFCPP        WC+PP  HFDLSQP+F  IA+Y+AG+VPV +RRV C + GG++F I G+ +F ++L  NVGGAG VRA+ IKG+RT+W  M +NWGQ W +   L GQ LSF +TTS+G      +V PP W   GQ++ G+
Sbjct:   87 HSGWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDGK 309          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 9.135e-64
Identity = 115/249 (46.18%), Postives = 164/249 (65.86%), Query Frame = 1
Query:    4 KEKKMALWVILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCAN--DPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYT 717
            K+    L +++ +   SL++      GW +  ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG C+QI C +  +P+WCL+G ++ +T TN CPP        GGWC+PP  HFD+++P +  I  Y+AGIVPV+Y+RV C + GG+RFT+ G +YF LVLI+NV G+G +++V +KG  T   P+SRNWG NWQS++ L GQ+L+F VT++ G ++V  N+ P  W FGQ+++
Sbjct:    7 KKTPSILPLVVVIAAASLIAPTTA--GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.035e-63
Identity = 116/228 (50.88%), Postives = 152/228 (66.67%), Query Frame = 1
Query:   67 VQGY---GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYNVAPPKWSFGQTY 714
            V GY   G W  AHATFY              YGNL++ GYG +TAALST LFN+G  CG CFQI C+  P      S +VTATN CPP        GGWC+PP  HFD+++P F  +A +RAGI+PV YRRV C+R+GG+RF   G+SY+ L+ + NVGGAGD++++++KGSRT W  MS NWG ++Q+ S L GQSLSF VT+ + G ++ ++NVAP  WS G+TY
Sbjct:   28 VAGYYRPGPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTY 255          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.658e-63
Identity = 116/224 (51.79%), Postives = 149/224 (66.52%), Query Frame = 1
Query:   82 GWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCAND--PQWCLRGSII-VTATNFCPP------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGRQ 726
            GW+   ATFY              YGNLY QGYG N AALST LFNNG SCG C+ I+C  D  P  C  G+ I VT TNFCPP      GGWC+    HFD+SQP +++I  Y AGIVP++Y++V+C R+GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS T W  MSRNWG NWQ  + L GQ+LSF VT++ G ++V  +V P  WSFGQT++  Q
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.117e-61
Identity = 110/223 (49.33%), Postives = 141/223 (63.23%), Query Frame = 1
Query:   79 GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGS-RTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTY 714
            G W  AHATFY              Y +   +GYG  T A+ST LF  G  CGAC+++ C + P  C  G+  ++VTATN CPP        GGWC+PP  HFDLS P F  IAQ +AGIVP+ YRRV C + GGIR+TI G+ YFNLV+++NVGGAGDV  +S+KG+ R +W P+ RNWGQ WQ++  L G+SL+F V T +     S++V PP W FG TY
Sbjct:   40 GPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTY 262          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.458e-61
Identity = 110/220 (50.00%), Postives = 147/220 (66.82%), Query Frame = 1
Query:   85 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPP------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYT 717
            W+   ATFY              YGNLY QGYG N AALST LFN+G SCG C+ I+C  +  P WC  G +I VT TN+CPP      GGWC+    HFD+SQP +++I  Y AGI+P++Y++V+C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G ++V  +  P  WSFGQT++
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.542e-61
Identity = 116/241 (48.13%), Postives = 152/241 (63.07%), Query Frame = 1
Query:   25 WVILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRGSII-VTATNFCPPG---GWCDPPNHHFDLSQPVFQHIAQY-RAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTR-WQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGR 723
            +++  +  +S +S      GWI AHAT+Y              Y N Y  G+G +TAALS  LF +G SCG C+Q+ C    DP+WCLRG+ + VTATNFCP     GWC+ P HHFD+S P F  IA+    GIVPV YRRV CKR GG+RFT+ G   FN+V+I+NVGG G VR+V+++GS+ + W  M+RNWG NWQS+  L GQ LSF VT ++  +    NV P  W FGQT++ R
Sbjct:    7 YLVTVILLVSTLSVGMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSR 247          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.003e-60
Identity = 111/223 (49.78%), Postives = 142/223 (63.68%), Query Frame = 1
Query:   85 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGRQ 726
            W  A AT+Y              YG+L   GYG  T  LS  LF  G  CGACF++ C +D +WC+ G SII+TATNFC P        GG C+PPN HF L    F+ IA ++AG +PV YRR+ C++ G +RFT++G   F  VLITNV G+GD+ AV IKGSRT W PM RNWGQNW  N+ L  Q+LSF VT+S+  +V SYNV+P  W++GQT+ G+Q
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQ 262          
The following BLAST results are available for this feature:
BLAST of CX043294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXP27_ORYSJ1.506e-6651.45Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP31_ORYSJ2.174e-6550.00Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH1.841e-6452.47Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP15_ORYSJ9.135e-6446.18Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH2.035e-6350.88Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ORYSJ2.658e-6351.79Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.117e-6149.33Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ1.458e-6150.00Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH5.542e-6148.13Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP13_ARATH8.003e-6049.78Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B05-D10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043294 ID=CX043294; Name=CX043294; organism=Citrus sinensis; type=EST; length=728bp
TCAAAGGAAAAAAAAATGGCTCTTTGGGTGATTCTTTGTGTTGGGTTTCT
CTCATTGGTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCTCATG
CAACTTTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGCTTGT
GGGTACGGCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAGCACT
TAGCACTGCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTTCAAA
TTATGTGCGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCATTGTC
ACTGCCACTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTAACCA
CCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTATAGAG
CTGGTATTGTTCCTGTAATCTACAGAAGGGTGAGATGCAAGAGAAATGGG
GGCATAAGGTTCACAATCAATGGCCATTCTTACTTCAATTTAGTTCTAAT
AACAAACGTGGGTGGAGCTGGTGACGTGCGTGCTGTATCCATCAAAGGTT
CAAGGACTAGATGGCAACCGATGTCGAGAAACTGGGGCCAAAACTGGCAA
AGCAACTCGTATCTTAATGGACAAAGCCTCTCTTTTGTTGTGACCACAAG
TAATGGCCACAGTGTTGTTTCTTACAATGTTGCCCCTCCTAAGTGGTCAT
TTGGGCAGACTTATACCGGCAGACAATT
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