CX043294

Overview
NameCX043294
Unique NameCX043294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:5..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 61/204 (29.90%), Postives = 89/204 (43.63%), Query Frame = 1
Query:  175 GYGTNTA---------ALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGG---IRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSL--SFVVTTSNGHS---VVSYNVAPPKWSFGQTY 714
            GYG+  A         A   +LFNNG  CG C+Q++C   P  C    I VT T+ C PGG C     H DLS      +A+         AG++ V Y+R  C   G     R     + Y+   ++    G GD+  V I+ +   +  M       W+ NS   G +L   F +  ++G S   +V+YNV P  W   ++Y
Sbjct:   55 GYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPA-CSGSPITVTITDEC-PGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGGSFISMQEMRSAVWKVNS---GSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESY 253          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 64/223 (28.70%), Postives = 98/223 (43.95%), Query Frame = 1
Query:   85 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTINGHS---YFNLVLITNVGGAGDVRAVSIKGSRTR-WQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWS 699
            W  A AT+Y               G  N     + + T+  +  +F +G  CG+C+QI C N P  C     ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + ++RV C   G  + F +   S   YF  VL+    G GDV  V +  + ++ W PM  +WG  W+  SN  L     S  +T  +G  +V+  V P  W+
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYF-AVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSNHRLTA-PFSLRITNESGKQLVASQVIPANWA 255          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 60/230 (26.09%), Postives = 97/230 (42.17%), Query Frame = 1
Query:   64 SVQGYGGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG---GIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT---RWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWS 699
            ++ G   W NA AT+Y               G   +    +   T+  +  L+  G  CG+C+++ C  +P       ++ +T  N+ P         +HFDLS   F  +A+        RAGI+ V + RV C+  G   G          +  VL+    G GDV  V +K +     RW PM  +WG  W+  SN  L     S  + + +G ++V+ +V P  W+
Sbjct:   41 AIGGAAAWGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLS------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 62/234 (26.50%), Postives = 101/234 (43.16%), Query Frame = 1
Query:   76 YGG-WINAHATFYXXXXXXXXXXXXXX---YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSIK-GSRTRWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGR 723
            YG  W+ A ATFY                 Y ++    +   TA  +  +F +GL C AC++I C  +P  C    ++V  T+      +     +HFDLS   F  +A+        +AG + + +RRV+CK   G + T +     + ++  +L+    G G++ AV IK      + PM  +WG  W+      L G   S  +T+  G  +V  +V P  W     YT +
Sbjct:   14 YGSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITD----KNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIWRIDPKKPLKG-PFSIRLTSEGGAHLVQDDVIPANWKPDTVYTSK 241          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 60/219 (27.40%), Postives = 99/219 (45.21%), Query Frame = 1
Query:   85 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNG-GIRFTINGHSY---FNLVLITNVGGAGDVRAVSI-KGSRTRWQPMSRNWGQNWQSNSYLNGQ-SLSFVVTTSNG-HSVVSYNVAPPKWSFGQTY 714
            ++N+ AT+Y              YG           + +S  L+NNG  CGAC+Q+ C   P  C    + V AT+     G  +   P  +  +++P  ++   Y  G+V V Y+R+ C+  G  + + I+  SY   +  +L+  VGG  D+ AV + +     W+ M R +G      +   G  +L F+V  S G + + S N  P  W+ G TY
Sbjct:   27 FVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPH-CSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTEN-QLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATY 243          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/185 (29.19%), Postives = 86/185 (46.49%), Query Frame = 1
Query:  211 LFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPP--NHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSI--KGSRTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTY 714
            +F +G  CG+CF+I C+  P+ C     ++  T+        D P   +HFDLS   F  +A+        +AGI+   +RRV+CK     + T +     +  +  +L+  V G GDV  V I  KGS   W+ +  +WG  W+ ++   L G   S  VTT  G  +++ +  P  W     Y
Sbjct:   85 IFKDGKGCGSCFEIKCSK-PEACSDKPALIHVTDM------NDEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSE-EWKALKESWGAIWRIDTPKPLKG-PFSVRVTTEGGEKIIAEDAIPDGWKADSVY 260          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 61/230 (26.52%), Postives = 100/230 (43.48%), Query Frame = 1
Query:   85 WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDP-PNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIK-GSRTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGR 723
            W++A +T+Y                Y N+    +   T   +T +F +G  CG+CF+I C   P+ C   ++ VT T+        +P   +HFDLS   F  +A+         AG + + +RRV+CK     + T +     N     +L+  V G GDV AV IK   + +W  +  +WG  W+ ++   L G   +   TT  G      +V P  W    +Y+ +
Sbjct:   41 WLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTK-PESCSGEAVTVTITDDNE-----EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTG-PFTVRYTTEGGTKSEFEDVIPEGWKADTSYSAK 263          
BLAST of CX043294 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 59/230 (25.65%), Postives = 101/230 (43.91%), Query Frame = 1
Query:   85 WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDP-PNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNVGGAGDVRAVSIK-GSRTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYNVAPPKWSFGQTYTGR 723
            W++A +T+Y                Y ++    +   T   +T +F +G  CG+CF+I C   P+ C    ++V  T+        +P   +HFDLS   F  +A+         AG + + +RRV+CK   G + T +     +  +  +L+  V G GDV AV IK   + +W  +  +WG  W+ ++   L G   +   TT  G    + +V P  W    +Y  +
Sbjct:   41 WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVVVHITDDNE-----EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 263          
The following BLAST results are available for this feature:
BLAST of CX043294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXPB4_ARATH1.931e-1329.90Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
EXPB3_ORYSJ2.523e-1328.70Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB8_ORYSJ1.252e-1226.09Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAC1_CYNDA2.135e-1226.50Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXLB1_ARATH2.789e-1227.40Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXPB1_ORYSJ8.115e-1229.19Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAL1_LOLPR2.361e-1126.52Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
MPAP1_PHLPR3.084e-1125.65Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B05-D10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043294 ID=CX043294; Name=CX043294; organism=Citrus sinensis; type=EST; length=728bp
TCAAAGGAAAAAAAAATGGCTCTTTGGGTGATTCTTTGTGTTGGGTTTCT
CTCATTGGTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCTCATG
CAACTTTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGCTTGT
GGGTACGGCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAGCACT
TAGCACTGCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTTCAAA
TTATGTGCGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCATTGTC
ACTGCCACTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTAACCA
CCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTATAGAG
CTGGTATTGTTCCTGTAATCTACAGAAGGGTGAGATGCAAGAGAAATGGG
GGCATAAGGTTCACAATCAATGGCCATTCTTACTTCAATTTAGTTCTAAT
AACAAACGTGGGTGGAGCTGGTGACGTGCGTGCTGTATCCATCAAAGGTT
CAAGGACTAGATGGCAACCGATGTCGAGAAACTGGGGCCAAAACTGGCAA
AGCAACTCGTATCTTAATGGACAAAGCCTCTCTTTTGTTGTGACCACAAG
TAATGGCCACAGTGTTGTTTCTTACAATGTTGCCCCTCCTAAGTGGTCAT
TTGGGCAGACTTATACCGGCAGACAATT
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