CN186140

Overview
NameCN186140
Unique NameCN186140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:974..1746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: OAT_PLAFD (Ornithine aminotransferase OS=Plasmodium falciparum (isolate CDC / Honduras) GN=OAT PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.631e-21
Identity = 64/207 (30.92%), Postives = 106/207 (51.21%), Query Frame = -2
Query:  158 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPPIGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPAEVDELISKYGKALKATEERV 772
            KY++LF+ADEV    GR G +     Y +KPD++   KALS  + PI AIL + +V  V       L    HG TY G+P++ A+ +EALK+     + E  +K+ AP  Q+  +   DS  + E+RG GL+   EF ++          W I   F    +++G++ R V    + ++PP  ++  ++DE      K +K  ++ +
Sbjct:  225 KYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLV-------LKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKND------LVNVWDICLKF----KENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTVKFFDDNL 414          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: OAT_PLAF7 (Ornithine aminotransferase OS=Plasmodium falciparum (isolate 3D7) GN=OAT PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.631e-21
Identity = 64/207 (30.92%), Postives = 106/207 (51.21%), Query Frame = -2
Query:  158 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPPIGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPAEVDELISKYGKALKATEERV 772
            KY++LF+ADEV    GR G +     Y +KPD++   KALS  + PI AIL + +V  V       L    HG TY G+P++ A+ +EALK+     + E  +K+ AP  Q+  +   DS  + E+RG GL+   EF ++          W I   F    +++G++ R V    + ++PP  ++  ++DE      K +K  ++ +
Sbjct:  225 KYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLV-------LKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKND------LVNVWDICLKF----KENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTVKFFDDNL 414          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_ECOSM (Putrescine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=patA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20
Identity = 63/212 (29.72%), Postives = 104/212 (49.06%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +   P  + E RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + +++I    KAL A    V+E
Sbjct:  263 EFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVIKAARKALAAIRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_ECOL5 (Putrescine aminotransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20
Identity = 63/212 (29.72%), Postives = 104/212 (49.06%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +   P  + E RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + +++I    KAL A    V+E
Sbjct:  263 EFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVIKAARKALAAMRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_SHIBS (Putrescine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=patA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.802e-20
Identity = 63/212 (29.72%), Postives = 104/212 (49.06%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N++ Q  +      DG +  +   P  + E RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  263 EFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_SHISS (Putrescine aminotransferase OS=Shigella sonnei (strain Ss046) GN=patA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 63/212 (29.72%), Postives = 104/212 (49.06%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q ++      DG +  +   P  + E RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  263 EFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQADQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_KLEP7 (Putrescine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=patA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 61/212 (28.77%), Postives = 104/212 (49.06%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +   +N+  Q  +      DG +  +   P  + E+RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + ++++    KAL A    V+E
Sbjct:  263 EFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNE-----------IGYDFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTLEQCEQVLKAARKALAALRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_KLEP3 (Putrescine aminotransferase OS=Klebsiella pneumoniae (strain 342) GN=patA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 61/212 (28.77%), Postives = 104/212 (49.06%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +   +N+  Q  +      DG +  +   P  + E+RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + ++++    KAL A    V+E
Sbjct:  263 EFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNE-----------IGYDFASEMFRQRVLVAGTLNNAKTIRVEPPLTLTLEQCEQVLKAARKALAALRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5)

HSP 1 Score: 98.5969 bits (244), Expect = 4.015e-20
Identity = 63/212 (29.72%), Postives = 103/212 (48.58%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +   P  + E RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  263 EFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458          
BLAST of CN186140 vs. ExPASy Swiss-Prot
Match: PAT_SHIF8 (Putrescine aminotransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=patA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.015e-20
Identity = 63/212 (29.72%), Postives = 103/212 (48.58%), Query Frame = -2
Query:  152 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPP--IGEIRGTGLINGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 772
            ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +   P  + E RG G++   EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  263 EFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458          
The following BLAST results are available for this feature:
BLAST of CN186140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
OAT_PLAFD3.631e-2130.92Ornithine aminotransferase OS=Plasmodium falciparu... [more]
OAT_PLAF73.631e-2130.92Ornithine aminotransferase OS=Plasmodium falciparu... [more]
PAT_ECOSM1.056e-2029.72Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOL51.056e-2029.72Putrescine aminotransferase OS=Escherichia coli O6... [more]
PAT_SHIBS1.802e-2029.72Putrescine aminotransferase OS=Shigella boydii ser... [more]
PAT_SHISS3.074e-2029.72Putrescine aminotransferase OS=Shigella sonnei (st... [more]
PAT_KLEP73.074e-2028.77Putrescine aminotransferase OS=Klebsiella pneumoni... [more]
PAT_KLEP33.074e-2028.77Putrescine aminotransferase OS=Klebsiella pneumoni... [more]
PAT_SHIFL4.015e-2029.72Putrescine aminotransferase OS=Shigella flexneri G... [more]
PAT_SHIF84.015e-2029.72Putrescine aminotransferase OS=Shigella flexneri s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186140 ID=CN186140; Name=CN186140; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTGATGGCAAATGCTTTATTGAAGCACCCATTTAA
GGGCACGTCACAGAAGAGGAAAAAAAATATTTGCCCTTATAGAAGTCTTA
CAGTTTTTTTTCATCAATATCAGCCATTACAATTTACTGCTGGGACTTGA
GTTCCTTCACCCTCTCCTCGGTCGCCTTCAGTGCCTTCCCATATTTGCTT
ATTAACTCATCAACCTCTGCAGGGGACATTATAAATGGAGGAGACATCAT
AATGTTGTCACCTGAAACACGTACTAACATTCCGTGCTTTTCGCACTGTG
CTCCAAAATATGCACCTATCCCCCATTCAGGAGGGAACGGTTCATTTGGA
GACTTGTTGTCTGCAAACTCTGTACCATTAATCAAACCAGTGCCCCGAAT
CTCTCCAATGGGGGGACTATCAGAAAAGGCTTTTACACCATCTTGAAACT
TTGGCGCTATCTTATTTACTTGCTCAACAATATTTCTTTCCTTGTAAATC
TTAAGCGCTTCGATGGCAACGGCACAGGAAACAGGATGCCCAGAATAAGT
AAATCCATGAGAGAAAGAACCAAGTGTGTTGCTTTGAGAGTGAATGACTT
CTGAAACTTCGGGACTCACAAGAATAGCTCCAATGGGCATATATGCTGAA
GAAAGGGCCTTTGCGAAGGACACAAGATCTGGTTTAATGCTGTATTTGTC
ACAACCAAACATTGTGCCAAGTCTTCCAAATGCACAAATTACCTCATCTG
CTATAAAAAGGATGTCATATTTT
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