CN186138

Overview
NameCN186138
Unique NameCN186138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.458e-61
Identity = 116/222 (52.25%), Postives = 158/222 (71.17%), Query Frame = 3
Query:   60 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-GYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            M K+K  +N+  IGHVD+GKSTT G L+Y  G ID +++E+ ++EA E  K  F++A+V+D LK ERERG+TID+A  KFET +Y  T++D PGHRDFIKNMITG SQAD AVL++D      +A      QTREH  LA TLG+KQ+    NKMD  T  YS+  Y+++ K +S  L KV GYNP+++ F+P +  +GDN+++RS N+ WYKGPTL++ALD
Sbjct:    1 MAKQKPVLNVAFIGHVDAGKSTTVGRLLYDSGAIDPQLLEKLKREAQERGKAGFEFAYVMDNLKEERERGVTIDVAHKKFETQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVDVN----DAKTGIQPQTREHMFLARTLGIKQIAVAINKMD--TVNYSQEEYEKMKKMLSEQLLKVLGYNPDQIDFIPTASLKGDNVVKRSENMPWYKGPTLVEALD 216          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.458e-61
Identity = 114/220 (51.82%), Postives = 152/220 (69.09%), Query Frame = 3
Query:   69 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 728
            +K H+N+ VIGHVD GKST  G L+++ G +   +IE+++ EA E  K SF +AWV+D LK ERERG+TIDI+  +F+T +YY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   KYS+ RY+E+ KEVS  L  VG+  + VPF+P S FEGDN+ + S N  WY GP LL+ L+N+
Sbjct:    3 DKPHMNLAVIGHVDHGKSTFVGRLMFETGAVPAHLIEKYKAEAKEKGKESFAFAWVMDTLKEERERGVTIDISHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLSRTLGINQLIVAINKMDAA--KYSEDRYNEVKKEVSQLLGMVGFKADDVPFIPTSAFEGDNITKSSANTPWYTGPALLECLNNL 213          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.249e-61
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 3
Query:   60 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            M KEK HIN+  IGHVD GKST  G L+Y+ G I + +IE+  KEA E  K +F++AWV+D+LK ERERG+TID+A  KF+T +YY T++D PGHRDFIKNMITG SQAD AVL++D              QTREH  LA TLG+ Q+I   NKMD     Y +  Y+   + VS  LK VGY  +++PF+P+S + GDN+ ++S    WY GPTLL+A D
Sbjct:    1 MAKEKEHINVAFIGHVDHGKSTLIGRLLYETGEIPEHIIEKMRKEAQEKGKATFEFAWVMDRLKEERERGVTIDVAHRKFQTDKYYITIVDCPGHRDFIKNMITGASQADAAVLVMDVVE-------KVQPQTREHIFLARTLGINQIIVAINKMDRV--NYDQKEYEAAKEAVSKLLKMVGYKVDEIPFIPVSAYYGDNVAKKSDKTPWYNGPTLLEAFD 212          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.453e-61
Identity = 109/218 (50.00%), Postives = 148/218 (67.89%), Query Frame = 3
Query:   69 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            +K H+N+ VIGHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET + + T+ID PGHRDFIKNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLGV+Q++   NKMD     Y + RY++I  EVS  LK +GY+P K+ F+P+S  +GDN+  +S+N  WY GPTLL+ALD
Sbjct:   14 QKPHLNLAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDIV--NYDQKRYEQIKAEVSKLLKLLGYDPSKIHFIPVSAIKGDNVKTKSSNTPWYNGPTLLEALD 229          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.235e-60
Identity = 107/218 (49.08%), Postives = 148/218 (67.89%), Query Frame = 3
Query:   69 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET + + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLG++Q++   NKMDA    Y + RY+++  EVS  LK +GY+P K+ FVP+S  +GDN+  +S N  WY+GPTLL+ LD
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDAV--NYDQKRYEQVKAEVSKLLKLLGYDPSKIHFVPVSAIKGDNVRTKSPNTPWYQGPTLLEVLD 229          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.612e-60
Identity = 111/221 (50.23%), Postives = 151/221 (68.33%), Query Frame = 3
Query:   60 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            M   K H+N+ VIGH+D GKSTT G ++++ G + + +++ ++KEA    K +F++AWV+D LK ERERGITIDIA  KFET +Y  TV+D PGHRDF+KNMITG SQAD A++++  T G  E       QT+EH  L+ TLG+ Q+I   NKMDA    YS+ +Y+E   +++  +  VG+ P + PF+PIS F GDN+ E S N  WYKGPTLL ALD
Sbjct:    1 MAAAKPHMNLAVIGHIDHGKSTTVGRILFETGVVQQHILDGYKKEAESKGKATFEFAWVMDSLKEERERGITIDIAHKKFETPKYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME-------QTKEHVFLSKTLGINQIIVAINKMDAV--NYSEEKYNEAKDKMTKLIMSVGFKPAETPFIPISAFCGDNIKEASANTPWYKGPTLLAALD 212          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.750e-60
Identity = 119/223 (53.36%), Postives = 157/223 (70.40%), Query Frame = 3
Query:   60 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 728
            M K+K H+NIV IGHVD GKSTT G L+Y  G I +++I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I
Sbjct:    1 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMV--NYNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQI 210          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.592e-60
Identity = 111/221 (50.23%), Postives = 150/221 (67.87%), Query Frame = 3
Query:   60 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            M  +K H+N+ VIGH+D GKSTT G ++++ G +   +IE + KEA    K +F++AWV+D LK ERERGITIDIA  +F+T +YY TV+D PGHRDF+KNMITG SQAD A+L++ +  G  E       QT+EH  LA TLG+ Q+I   NKMDA   K+ + R++E+ KE+S  +K VGY PE+  F+PIS  +G N+   S    WYKGP L+ ALD
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTTVGRMMFETGAVPAHIIEAYRKEAESKGKATFEFAWVMDNLKEERERGITIDIAHKRFDTPKYYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQIIIAINKMDAV--KFDEKRFNEVKKELSDLIKMVGYKPEETLFIPISSLQGINIKANSPETPWYKGPALIPALD 212          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.692e-60
Identity = 120/223 (53.81%), Postives = 156/223 (69.96%), Query Frame = 3
Query:   60 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 728
            M KEK H+NIV IGHVD GKSTT G L++    I +++I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVLI+ +T G          QT+EHA LA TLG+  +I   NKMDA   KY + R+ E+  +V+  L+ +GY  +  P +PIS +EGDN++++S  + WY GPTL++ALD I
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLIVAATDGVMP-------QTKEHAFLARTLGINHIIVGVNKMDAV--KYDEKRFKEVATQVTKLLQMLGY--KNFPVIPISAWEGDNVVKKSDKMPWYNGPTLIEALDQI 210          
BLAST of CN186138 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.692e-60
Identity = 106/218 (48.62%), Postives = 147/218 (67.43%), Query Frame = 3
Query:   69 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMEKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD 722
            +K HIN+ V+GHVD+GKST  G L+Y+ G +D++  +  E+ A +M K  F +AW+LD+ K ERERG+TI+     FET + + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLG++Q++   NKMD     Y + RY+++  EVS  LK +GY+P K+ FVP+S  +GDN+  +S+N  WY GPTLL+ LD
Sbjct:   14 QKPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKGFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDVV--NYDQKRYEQVKSEVSKLLKLLGYDPSKIHFVPVSAVKGDNVRTKSSNTPWYNGPTLLEVLD 229          
The following BLAST results are available for this feature:
BLAST of CN186138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METJA1.458e-6152.25Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_METBU1.458e-6151.82Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_ARCFU3.249e-6151.58Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_PYRIL9.453e-6150.00Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRCJ1.235e-6049.08Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_METLZ1.612e-6050.23Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_PYRFU2.750e-6053.36Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METB63.592e-6050.23Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_THESM4.692e-6053.81Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_PYRAR4.692e-6048.62Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186138 ID=CN186138; Name=CN186138; organism=Citrus sinensis; type=EST; length=730bp
CCCGGCGAAGAGACATTTTCCGAATATCATTTTAATAAGGTTTTTTCTAG
ATCTGCTTAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGG
CCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGC
TTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCT
GAGATGGAGAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAA
GGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCG
AGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGAC
TTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCT
TATCATTGACTCTACCACGGGGGGTTTTGAAGCTGGTATCTCCAAGGATG
GTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAG
ATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAGTACTCAAA
GGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGG
TTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAG
GGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCC
AACCCTGCTGGATGCTCTTGACAATATCAA
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