DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKLAGDPNLHFVESP 592
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P+W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL     L   + P
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEE-CKQHLLASDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 211          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKLAGDPNLHFVESP 592
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P+W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL     L   + P
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 211          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV 430
            S K+++VG    GKT+ ++R+    F+ KY+PTIGV+           K+    WD AGQE+FG +   Y+ +   A+I+FD T   T+     W  D+  C   EN+P +L  NK D+
Sbjct:   28 SLKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDYCFNNENLPTILLANKCDL 146          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 529
            K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I    WDTAGQE+F  L   ++      +++FD+T   ++ NV  W     +   CEN  IVLCGNK D+++ R VK ++      K  + Y+E SA +  N  +
Sbjct:   11 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISQ 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 49/162 (30.25%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI  E +      +         DTAGQE++  +R+ Y   G+  ++++ +T+R +++ + T+ + + RV +    PI++ GNK D+   +V +KQ   +  R+   ++ E SAKS  N E  F  L R++
Sbjct:    9 YKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIE-ESYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREI 169          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 44/163 (26.99%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 535
            + Q  DY  FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ +V + +       +L  +++E SAK N N ++ F
Sbjct:   15 ADQNFDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 47/163 (28.83%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAGQE+F  +   YY      ++++DVT + ++ ++  W  ++     +++ ++L GNKVD  + R VK +      +   L + E SAK+  N +  F  +A++L
Sbjct:   63 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 535
            FK+V++GD   GK+  + R+   EF    + TIGVE           +++   WDTAGQE+F  +   YY     A++++D+T R T+++V  W  +L       +  +L GNK D++N R V  ++      ++ L + E SA  + N +  F
Sbjct:   13 FKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAF 166          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 57/176 (32.39%), Postives = 84/176 (47.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 535
            SQQ  +    KLVIVGDG  GKT  +     G+F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F
Sbjct:    2 SQQVGNSIRRKLVIVGDGACGKTCLLIVFSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 49/159 (30.82%), Postives = 79/159 (49.69%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 520
            K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I    WDTAGQE+F  L   ++      +++FD+T   ++ NV  W     +   CEN  IVLCGNK D+++ R VK ++      K  + Y+E SA +  N
Sbjct:   11 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 169          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB33B_PONAB3.967e-1530.17Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RB33B_HUMAN3.967e-1530.17Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RB32C_DICDI3.967e-1535.29Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RB27A_RAT3.967e-1530.25Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RAS_LACBI3.967e-1530.25Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAB3D_RAT3.967e-1526.99GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB26_BOVIN3.967e-1528.83Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
ARA1_ARATH3.967e-1530.52Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RHO1_YEAST5.181e-1532.39GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RB27A_MOUSE5.181e-1530.82Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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